Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0871 ATGGTTGTTGATTTAGGAGGTTCATGTGGGTATGGAAAAGCGGTGGAGCAACCGCCATTTTCGTCGTTAGTCACGGCGGGAGGCCCTTCCTTGTACCAATCCGGCAAAGGCTGTGGAGCTTGTTATCAGGTGAAGTGCTCGAGAAAAGGTGCATGCTCAGGGAATCCGGTGACAGTGGTTATAACAGATCGTTGTCCTGGTTGCTCCCGTACGTCTAATTCCGTCCACTTCGACCTCAGCGGCACTGCTTTTGGTGCTATGGCTGCAACGGGCCGTGCCAATGAACTCCACAATCTAGGCGTTTTGAAGATTCAATATAGAAGAGTGCAATGCAATTATCCGGGAACTCCGATCAACTTCAAAGTGCAAACGGGGTCGAACCCGAACCATTTTGCAACTCTGATCGAATACGAAGATGGAGATGGAGATCTTGCTTCAGTGGAGCTGAAACAAGCGCTGGACTCGTCCTCATGGATTCAAATGAAGCAGTCATGGGGCGCTGTTTGGAAGCTGGACTCCGGCTCCGCCCTCCGAGCTCCCTTCTCCCTCAGGCTCACCACCCTCGACTCCGGAAAGACCTTGGTCGCTACCAACGTAATCCCGGACCGGTGGCAGCCGGGGAAGACTTATACATCAGTTGGTAAACTTGGATAA 654 52.14 MVVDLGGSCGYGKAVEQPPFSSLVTAGGPSLYQSGKGCGACYQVKCSRKGACSGNPVTVVITDRCPGCSRTSNSVHFDLSGTAFGAMAATGRANELHNLGVLKIQYRRVQCNYPGTPINFKVQTGSNPNHFATLIEYEDGDGDLASVELKQALDSSSWIQMKQSWGAVWKLDSGSALRAPFSLRLTTLDSGKTLVATNVIPDRWQPGKTYTSVGKLG 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30395126 30396472 + Hsped.03g08710.1 Hepe03g0871 565869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0871 217 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 129 212 IPR007117 -
Hepe03g0871 217 SUPERFAMILY Barwin-like endoglucanases 6 115 IPR036908 -
Hepe03g0871 217 SUPERFAMILY PHL pollen allergen 117 212 IPR036749 -
Hepe03g0871 217 Gene3D - 2 111 IPR036908 -
Hepe03g0871 217 SMART dpbb_1 24 106 IPR007112 -
Hepe03g0871 217 PRINTS Expansin/Lol pI family signature 99 115 IPR007118 GO:0005576(InterPro)
Hepe03g0871 217 PRINTS Expansin/Lol pI family signature 198 212 IPR007118 GO:0005576(InterPro)
Hepe03g0871 217 PRINTS Expansin/Lol pI family signature 28 46 IPR007118 GO:0005576(InterPro)
Hepe03g0871 217 PRINTS Expansin/Lol pI family signature 158 172 IPR007118 GO:0005576(InterPro)
Hepe03g0871 217 PRINTS Expansin/Lol pI family signature 5 23 IPR007118 GO:0005576(InterPro)
Hepe03g0871 217 Pfam Lytic transglycolase 25 106 IPR009009 -
Hepe03g0871 217 Pfam Expansin C-terminal domain 118 201 IPR007117 -
Hepe03g0871 217 Gene3D - 112 213 IPR036749 -
Hepe03g0871 217 PRINTS Major pollen allergen Lol pI signature 167 184 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe03g0871 217 PRINTS Major pollen allergen Lol pI signature 26 37 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe03g0871 217 PRINTS Major pollen allergen Lol pI signature 66 81 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe03g0871 217 PRINTS Major pollen allergen Lol pI signature 136 151 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe03g0871 217 PRINTS Major pollen allergen Lol pI signature 88 103 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe03g0871 217 PRINTS Major pollen allergen Lol pI signature 120 135 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe03g0871 217 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 6 116 IPR007112 -
Hepe03g0871 217 PANTHER EXPANSIN-B3 6 213 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0871 Hepe-Chr3:30395126 Hepe03g0874 Hepe-Chr3:30471679 3.53e-145 dispersed
Hepe03g0871 Hepe-Chr3:30395126 Hepe03g0873 Hepe-Chr3:30419068 4.30e-146 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0871 - - - 0.0