Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0873 ATGGCACATTTATTCCATCATTATTATTCTCTTCTCTTTGCCACCCTCCTTTGTCTTTCACTTACCCCTTGCTTTTGCTTCCATCCCAAATCCTTTAATGTGTCCAAGTTATACGTCGAGTTCTATGATTCCGATTGGTCCCCCGCCGTCGCCACCTGGTACGGTAGCATTGACAGTGCTGGGAGCGATGGAGGTTCATGTGGGTATGGAAAAGCGGTGGAGCAACCGCCATTTTCGTCGTTAGTCACGGCGGGAGGCCCTTCCTTGTACCAATCCGGCAAAGGCTGTGGAGCTTGTTATCAGGTGAAGTGCTCGGGAAAAGGTGCATGCTCAGGGAATCCGGTGACAGTGGTTATAACAGATAGTTGTCCTGGCGGCCCCTGTGCGTCTGATTCCGTCCACTTCGACCTCAGCGGCACTGCTTTTGGTGCTATGGCTGCAACGGGCCGTGCCAATGAACTCCACAATTTAGGCGTTTTGCAGATTCAATATAGAAGAGTGCAATGCAATTATCCGGGAACTCCTATCAACTTCAAAGTGGAAACGGGGTCGAACCCGAACTATTTTGCAACTCTGATCGAATACGAAGATGGAGATGGAGATCTTGCTTCAGTCGAGCTGAAACAGGCGCTGGACTCGTCCTCATGGATTCCAATGAAGCAGTCATGGGGCGCTGTTTGGAAGCTGGACTCCGGCTCAGCCCTCCGAGCTCCCTTCTCCCTCAGGCTCACCACCCTCGACTCCGGAAAGACCTTGGTCGCTAACAACGTAATCCCGGACCGGTGGCAGCCGGGGCAGACTTATACATCAGTTGGTCAACTTGGATAA 828 51.81 MAHLFHHYYSLLFATLLCLSLTPCFCFHPKSFNVSKLYVEFYDSDWSPAVATWYGSIDSAGSDGGSCGYGKAVEQPPFSSLVTAGGPSLYQSGKGCGACYQVKCSGKGACSGNPVTVVITDSCPGGPCASDSVHFDLSGTAFGAMAATGRANELHNLGVLQIQYRRVQCNYPGTPINFKVETGSNPNYFATLIEYEDGDGDLASVELKQALDSSSWIPMKQSWGAVWKLDSGSALRAPFSLRLTTLDSGKTLVANNVIPDRWQPGQTYTSVGQLG 275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30419068 30420392 + Hsped.03g08730.1 Hepe03g0873 565871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0873 275 SMART dpbb_1 82 164 IPR007112 -
Hepe03g0873 275 Pfam Lytic transglycolase 83 164 IPR009009 -
Hepe03g0873 275 Pfam Expansin C-terminal domain 176 259 IPR007117 -
Hepe03g0873 275 Gene3D - 170 271 IPR036749 -
Hepe03g0873 275 Gene3D - 30 169 IPR036908 -
Hepe03g0873 275 PRINTS Major pollen allergen Lol pI signature 194 209 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe03g0873 275 PRINTS Major pollen allergen Lol pI signature 178 193 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe03g0873 275 PRINTS Major pollen allergen Lol pI signature 146 161 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe03g0873 275 PRINTS Major pollen allergen Lol pI signature 124 139 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe03g0873 275 PRINTS Major pollen allergen Lol pI signature 225 242 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe03g0873 275 PRINTS Major pollen allergen Lol pI signature 84 95 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe03g0873 275 SUPERFAMILY PHL pollen allergen 175 270 IPR036749 -
Hepe03g0873 275 CDD DPBB_EXPB_N 46 169 - -
Hepe03g0873 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 187 270 IPR007117 -
Hepe03g0873 275 PANTHER EXPANSIN-B3 16 273 - -
Hepe03g0873 275 SUPERFAMILY Barwin-like endoglucanases 45 194 IPR036908 -
Hepe03g0873 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 64 174 IPR007112 -
Hepe03g0873 275 PRINTS Expansin/Lol pI family signature 63 81 IPR007118 GO:0005576(InterPro)
Hepe03g0873 275 PRINTS Expansin/Lol pI family signature 45 60 IPR007118 GO:0005576(InterPro)
Hepe03g0873 275 PRINTS Expansin/Lol pI family signature 86 104 IPR007118 GO:0005576(InterPro)
Hepe03g0873 275 PRINTS Expansin/Lol pI family signature 256 270 IPR007118 GO:0005576(InterPro)
Hepe03g0873 275 PRINTS Expansin/Lol pI family signature 157 173 IPR007118 GO:0005576(InterPro)
Hepe03g0873 275 PRINTS Expansin/Lol pI family signature 216 230 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0873 Hepe-Chr3:30419068 Hepe05g2086 Hepe-Chr5:71374530 1.69e-160 dispersed
Hepe03g0871 Hepe-Chr3:30395126 Hepe03g0873 Hepe-Chr3:30419068 4.30e-146 proximal
Hepe03g0873 Hepe-Chr3:30419068 Hepe03g0874 Hepe-Chr3:30471679 7.80e-203 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0873 - - - 0.0