Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g0877 ATGGTCTCTAAGCGAGGAGAATTGGAGGTTTTGGTTGGAGAAATAAGAGGCGGAGGAGCGACCTCGATCATCCAGGAGGTCAAAGTTGAGATCGTCTTCGCCATGGAATCTGCAAGAGGTTCATGTGGGTATGGAAAAGCGGTGGAGCAACCGCCATTTTCTTCGTTAGTCACCGCGGGAGGCCCTTCCTTGTACCAATCCGACAAAGGCTGTGGAGCTTGTTATCAGGTGAAGTGCTCGGGAAAAAGTGCATGCTCAGGAAATACGGTGACAGTGGTTATAACAGATAGTTGTCCCGGCGGCCCCTGTGCGTCTGATTCCGTCCACTTCGACCTCAACGACACTGCTTTTGGTGCTATGGCTGCAACGGGCTGTGCCAATGAACTCCGCAATCTAGGTGTTTTGCAGATTCAATATAGAAGAGTGCAATGCAATTATCCGGGAACTCCGATCAACTTCAAAGTGCAAACGGGGTCGAACCAGAACTATTTTGCAACTCTGATCGAATACGAAGATGGAGATGGAGATCTTGCTTCAGTGAAGCTGAAACAGGCGCTGGACTCGTCCTCATGGATTCCAATGAAGCAGTCATGGGGCGCTATTTGGAAGCTGGACTCCGGCTCAGCTCTCCGAGCTCCCTTCTCCCTCAGGCTCACTACCCTCGACTCCGGAAAGACCTTGGTCGCTAACAACGTCATCTCGGACCGGTGGCAGCCGGGGCAGACTTATACATCAGTTAGTCAACTTGGATAA 753 51.26 MVSKRGELEVLVGEIRGGGATSIIQEVKVEIVFAMESARGSCGYGKAVEQPPFSSLVTAGGPSLYQSDKGCGACYQVKCSGKSACSGNTVTVVITDSCPGGPCASDSVHFDLNDTAFGAMAATGCANELRNLGVLQIQYRRVQCNYPGTPINFKVQTGSNQNYFATLIEYEDGDGDLASVKLKQALDSSSWIPMKQSWGAIWKLDSGSALRAPFSLRLTTLDSGKTLVANNVISDRWQPGQTYTSVSQLG 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 30505710 30508481 + Hsped.03g08770.1 Hepe03g0877 565875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g0877 250 Pfam Expansin C-terminal domain 151 233 IPR007117 -
Hepe03g0877 250 PRINTS Expansin/Lol pI family signature 38 56 IPR007118 GO:0005576(InterPro)
Hepe03g0877 250 PRINTS Expansin/Lol pI family signature 231 245 IPR007118 GO:0005576(InterPro)
Hepe03g0877 250 PRINTS Expansin/Lol pI family signature 191 205 IPR007118 GO:0005576(InterPro)
Hepe03g0877 250 PRINTS Expansin/Lol pI family signature 132 148 IPR007118 GO:0005576(InterPro)
Hepe03g0877 250 PRINTS Expansin/Lol pI family signature 61 79 IPR007118 GO:0005576(InterPro)
Hepe03g0877 250 PRINTS Major pollen allergen Lol pI signature 153 168 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe03g0877 250 PRINTS Major pollen allergen Lol pI signature 59 70 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe03g0877 250 PRINTS Major pollen allergen Lol pI signature 200 217 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe03g0877 250 PRINTS Major pollen allergen Lol pI signature 169 184 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe03g0877 250 PRINTS Major pollen allergen Lol pI signature 79 89 IPR005795 GO:0005576(InterPro)|GO:0019953(InterPro)
Hepe03g0877 250 Pfam Lytic transglycolase 58 139 IPR009009 -
Hepe03g0877 250 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 39 149 IPR007112 -
Hepe03g0877 250 SUPERFAMILY PHL pollen allergen 150 245 IPR036749 -
Hepe03g0877 250 SUPERFAMILY Barwin-like endoglucanases 39 169 IPR036908 -
Hepe03g0877 250 PANTHER EXPANSIN-B3 39 248 - -
Hepe03g0877 250 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 245 IPR007117 -
Hepe03g0877 250 Gene3D - 145 246 IPR036749 -
Hepe03g0877 250 SMART dpbb_1 57 139 IPR007112 -
Hepe03g0877 250 Gene3D - 13 144 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1363 Hepe-Chr2:17328154 Hepe03g0877 Hepe-Chr3:30505710 1.85e-17 dispersed
Hepe03g0877 Hepe-Chr3:30505710 Hepe05g2086 Hepe-Chr5:71374530 5.55e-120 dispersed
Hepe03g0874 Hepe-Chr3:30471679 Hepe03g0877 Hepe-Chr3:30505710 1.19e-143 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g0877 - - - 0.0