Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1010 ATGGCTCGAATCTTCGCCGCTACTCCCAATGGGGCCTCTAACACCGCTTTTTTGATCCACTGGCAACAAGCAGAGCGTCTCTTTTCTTTTTTTAAGGTTGATTTTGGACATTCGAATTTTAGCCCCTCACGAGGACGACGAACAATTTTGTGGAATCACAAATTTGTTCTTCTTCTCGGAACTCCCAACTCTTTCTCACTAAATCGATATGTGCATTCAAGTCTGGAGTGCTTTCTAAACGTTGTTAGGGCCCTCGGTATGGGAGCATGCCTCTCTGGGGATCGCAAGAATCCTGCGATCCCTTATTCTGAGCTTGCTTCCACTTCTCGTGATCATGCTGTTGTTACCCGAAGAAACTCCAAGAGGAAGATTACCAGAAAGGGTTCCTCTCCCTCTAATGAGTCTAGAAGGGAGATGTCGCTCCATCGAATTCCTGGCCGGATGTTTTTGAATGGATCAACTGATCATGCTTCTCTCTTTACTAGGCAAGGCAAGAAAGGCATTAATCAGGACGCTATGATTGTCTGGGAGAACTTTGGTTCAAAAGATGGTACAATATTTTGCGGAGTCTTTGATGGACACGGTCCCTTTGGCCATATGGTTGCAAAGAAAGTCAGAGATTCTCTTCCTCTAAAACTGAGTGCTCAGTGGGAATTGGATGCTACCAGAAAGGAAGGGCAAAATGAAGCCAGATGTCTAGTCTCTCCACCAACGCTGGTTAACAAGGACGCTGGAACCTCTCATTGTGATCCTGGTTGTCAGGACAGTTCCAACATTGACATGTATGTCATGTTGAAAGAGTCTTTTCTGAAGGCTTTTAAGGTGATGGACAAGGAGCTTAAACTACATCCATATATTGATTGCTATTCCAGTGGTACGACATCAGTTGCTTTGGTCAAACAGGATCAGGATCTTATCATTGGAAATGTTGGGGACTCGAGGGCTGTATTAGCTACCAGAGATCAAGCTAACTCTCTCATTGCAGTTCAGTTGACTGTGGACCTCAAGCCAAATCTTCCAAGGGAAGCTGAAAGGATCAGACTTTGCAAAGGAAGAATCTTTGCTCTTCAAAATGAGCCTGAGATTTTTCGAGTTTGGCTTCCCAACAGTGATTCTCCTGGTCTTGCTATGGCTAGAGCCTTCGGAGATTTCTGTTTAAAAGACTTTGGTGTGATAGCCGTTCCTGATGTTTCTTATTATCATCTTACTGAGAAAGACGAATTTGTGGTCCTGGCTACAGATGGGCTTTGGGATGTTCTCTCAAATGAAGAGGTTGTGGCAATTGTTGCATCTTCTCCGAGATCCTCTGCAGCTCGTAGCCTCGTGGAATCAGCTACTCGAGCATGGAGATTTAAGTACCCTACTGCCAAGGTGGATGATTGTGCTGTAGTCTGCCTGTACCTGGACTCTAGTGAGAATGCTACAGGGACAGCTAAATTGCAGGAGTTGCATACCAAGGAGATGGAAACTTAG 1473 45.01 MARIFAATPNGASNTAFLIHWQQAERLFSFFKVDFGHSNFSPSRGRRTILWNHKFVLLLGTPNSFSLNRYVHSSLECFLNVVRALGMGACLSGDRKNPAIPYSELASTSRDHAVVTRRNSKRKITRKGSSPSNESRREMSLHRIPGRMFLNGSTDHASLFTRQGKKGINQDAMIVWENFGSKDGTIFCGVFDGHGPFGHMVAKKVRDSLPLKLSAQWELDATRKEGQNEARCLVSPPTLVNKDAGTSHCDPGCQDSSNIDMYVMLKESFLKAFKVMDKELKLHPYIDCYSSGTTSVALVKQDQDLIIGNVGDSRAVLATRDQANSLIAVQLTVDLKPNLPREAERIRLCKGRIFALQNEPEIFRVWLPNSDSPGLAMARAFGDFCLKDFGVIAVPDVSYYHLTEKDEFVVLATDGLWDVLSNEEVVAIVASSPRSSAARSLVESATRAWRFKYPTAKVDDCAVVCLYLDSSENATGTAKLQELHTKEMET 490
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 55012115 55021923 - Hsped.03g10100.1 Hepe03g1010 566008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1010 490 CDD PP2Cc 156 468 IPR001932 -
Hepe03g1010 490 Gene3D - 149 475 IPR036457 -
Hepe03g1010 490 PANTHER PROTEIN PHOSPHATASE 134 466 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Hepe03g1010 490 ProSiteProfiles PPM-type phosphatase domain profile. 156 468 IPR001932 -
Hepe03g1010 490 MobiDBLite consensus disorder prediction 118 139 - -
Hepe03g1010 490 SMART PP2C_4 145 466 IPR001932 -
Hepe03g1010 490 Pfam Protein phosphatase 2C 170 443 IPR001932 -
Hepe03g1010 490 SUPERFAMILY PP2C-like 156 470 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1010 Hepe-Chr3:55012115 Hepe08g1888 Hepe-Chr8:48728316 1.06e-162 dispersed
Hepe06g1977 Hepe-Chr6:70991704 Hepe03g1010 Hepe-Chr3:55012115 2.35e-11 transposed
Hepe03g1010 Hepe-Chr3:55012115 Hepe08g1407 Hepe-Chr8:16615057 9.73e-21 wgd
Hepe03g1010 Hepe-Chr3:55012115 Hepe08g1761 Hepe-Chr8:34251428 1.06e-162 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1010 - - - 0.0