Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe03g1020 | ATGGATTCTGAGGACGATCTTCATTATTCCACCGACGACGATTGTGATTTCTACAGCGGCGATATGGATATGGGTATGGGCGGGGATTACAGCGATGACGATGATCCTGACGCTGAGGATTTTGTCGATGACGATAACGATGATTACTTCGAGTCCCGTCGACGCGAGCAAAATTATACCATACTAAATGAATCAGCTATAAGACAACGCCAAGAGGATGATGTCACGAGGATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAGTTGTCTTACTCCGCCACTTCAACTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAACAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGTAACTGTGGAATCTGTTTTGAGTCCTATCCAAATAGTAGGATCAAGTCAGCCGCCTGTGGTCATCCTTTCTGTGCCTCCTGCTGGGCAGGTTACATTACCACATCAATTAATGATGGTCCTGGATGTCTGACGTTGAGATGTCCTGATCCTTCTTGCGGTGCTGTGGTTGGTCAAGATATGATTAATTCGTTGACCTCCAATGAAGACAGGGAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAACTATGATGTAGCTTGCCTCTGCACATATGGCTTTTGCTGGAATTGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTAGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAATCAAGGGTGCATGCACATGACTTGCACACCTCCGTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCCGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCGAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCACTAGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATCCACTGCACTCCTGAGTCCCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAGTGTAGACGAGTTTTGAAATGGACTTATGCATATGGATATTACCTGCCAGAACAGGAGCAAGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCTGAGTCCGGATTAGAAAGGCTCCATCAATGCGCCGAAAAGGAACTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTTCGCACGAAGCTCGCTGGTCTTACCAGTGTTACTCGAAATTACTTTGAGAACCTGGTTAGAGCATTAGAGAATGGGCTTTCAGATGTGAACTCTCACGGAGCGAGTAGCTGCACAACAAGCTCGAAAAACACAGCAGGAAGTAGCAGTAAAGGAGGGAGAAGCGGACGGGGTAAGGGAATCAGTAGAACCAGCAGTTCGACCAGAAGCGGGGACAATGCAACTCATTGGTCGTGCGAACACTGTACCTTTGTGAACACCAGATCTGCTACCACATGCGAGATGTGCCATCATCGCCATTGA | 1767 | 44.65 | MDSEDDLHYSTDDDCDFYSGDMDMGMGGDYSDDDDPDAEDFVDDDNDDYFESRRREQNYTILNESAIRQRQEDDVTRISSVLSISRVASVVLLRHFNWSVTKVHDEWFADEARVRKQVGLLEAPVVHVLNARERNCGICFESYPNSRIKSAACGHPFCASCWAGYITTSINDGPGCLTLRCPDPSCGAVVGQDMINSLTSNEDREKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVACLCTYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKALADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEQAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSCTTSSKNTAGSSSKGGRSGRGKGISRTSSSTRSGDNATHWSCEHCTFVNTRSATTCEMCHHRH | 588 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 55936459 | 55945156 | + | Hsped.03g10200.1 | Hepe03g1020 | 566018 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe03g1020 | 588 | SUPERFAMILY | RING/U-box | 286 | 334 | - | - | |
Hepe03g1020 | 588 | ProSitePatterns | Zinc finger RanBP2-type signature. | 565 | 584 | IPR001876 | - | |
Hepe03g1020 | 588 | ProSiteProfiles | Zinc finger RING-type profile. | 136 | 182 | IPR001841 | - | |
Hepe03g1020 | 588 | MobiDBLite | consensus disorder prediction | 27 | 46 | - | - | |
Hepe03g1020 | 588 | Pfam | E3 ubiquitin-protein ligase ARIH1, UBA-like domain | 69 | 108 | IPR048962 | - | |
Hepe03g1020 | 588 | Coils | Coil | 353 | 373 | - | - | |
Hepe03g1020 | 588 | MobiDBLite | consensus disorder prediction | 1 | 19 | - | - | |
Hepe03g1020 | 588 | FunFam | RBR-type E3 ubiquitin transferase | 268 | 518 | - | - | |
Hepe03g1020 | 588 | Pfam | IBR domain | 289 | 329 | - | - | |
Hepe03g1020 | 588 | ProSiteProfiles | Zinc finger RanBP2 type profile. | 557 | 588 | IPR001876 | - | |
Hepe03g1020 | 588 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 130 | 217 | IPR013083 | - | |
Hepe03g1020 | 588 | Gene3D | - | 263 | 518 | - | - | |
Hepe03g1020 | 588 | MobiDBLite | consensus disorder prediction | 521 | 562 | - | - | |
Hepe03g1020 | 588 | SMART | ibrneu5 | 205 | 267 | IPR002867 | GO:0008270(InterPro) | |
Hepe03g1020 | 588 | SMART | ibrneu5 | 271 | 341 | IPR002867 | GO:0008270(InterPro) | |
Hepe03g1020 | 588 | Pfam | IBR domain, a half RING-finger domain | 205 | 267 | IPR002867 | GO:0008270(InterPro) | |
Hepe03g1020 | 588 | CDD | Rcat_RBR_ARI7-like | 290 | 344 | - | - | |
Hepe03g1020 | 588 | FunFam | RBR-type E3 ubiquitin transferase | 130 | 219 | - | - | |
Hepe03g1020 | 588 | SUPERFAMILY | Ran binding protein zinc finger-like | 561 | 586 | IPR036443 | - | |
Hepe03g1020 | 588 | CDD | RING-HC_ARI6-like | 133 | 194 | - | - | |
Hepe03g1020 | 588 | SUPERFAMILY | RING/U-box | 133 | 214 | - | - | |
Hepe03g1020 | 588 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 81 | 392 | IPR031127 | GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER) | |
Hepe03g1020 | 588 | SUPERFAMILY | RING/U-box | 205 | 274 | - | - | |
Hepe03g1020 | 588 | SMART | zf_4 | 563 | 587 | IPR001876 | - | |
Hepe03g1020 | 588 | Pfam | Ariadne domain | 354 | 540 | IPR045840 | - | |
Hepe03g1020 | 588 | MobiDBLite | consensus disorder prediction | 1 | 46 | - | - | |
Hepe03g1020 | 588 | ProSiteProfiles | TRIAD supradomain profile. | 132 | 345 | IPR044066 | - | |
Hepe03g1020 | 588 | CDD | BRcat_RBR_ANKIB1 | 212 | 276 | - | - | |
Hepe03g1020 | 588 | MobiDBLite | consensus disorder prediction | 521 | 540 | - | - | |
Hepe03g1020 | 588 | Gene3D | - | 558 | 588 | - | - | |
Hepe03g1020 | 588 | MobiDBLite | consensus disorder prediction | 547 | 562 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe03g1020 | Hepe-Chr3:55936459 | Hepe08g1932 | Hepe-Chr8:51899510 | 2.43e-318 | dispersed | |
Hepe08g1038 | Hepe-Chr8:9999051 | Hepe03g1020 | Hepe-Chr3:55936459 | 1.64e-57 | transposed | |
Hepe03g1020 | Hepe-Chr3:55936459 | Hepe08g1843 | Hepe-Chr8:46164162 | 2.43e-318 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe03g1020 | K11968 | - | csv:101223037 | 1091.26 |