Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1020 ATGGATTCTGAGGACGATCTTCATTATTCCACCGACGACGATTGTGATTTCTACAGCGGCGATATGGATATGGGTATGGGCGGGGATTACAGCGATGACGATGATCCTGACGCTGAGGATTTTGTCGATGACGATAACGATGATTACTTCGAGTCCCGTCGACGCGAGCAAAATTATACCATACTAAATGAATCAGCTATAAGACAACGCCAAGAGGATGATGTCACGAGGATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAGTTGTCTTACTCCGCCACTTCAACTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAACAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGTAACTGTGGAATCTGTTTTGAGTCCTATCCAAATAGTAGGATCAAGTCAGCCGCCTGTGGTCATCCTTTCTGTGCCTCCTGCTGGGCAGGTTACATTACCACATCAATTAATGATGGTCCTGGATGTCTGACGTTGAGATGTCCTGATCCTTCTTGCGGTGCTGTGGTTGGTCAAGATATGATTAATTCGTTGACCTCCAATGAAGACAGGGAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAACTATGATGTAGCTTGCCTCTGCACATATGGCTTTTGCTGGAATTGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTAGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAATCAAGGGTGCATGCACATGACTTGCACACCTCCGTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCCGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCGAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCACTAGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATCCACTGCACTCCTGAGTCCCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAGTGTAGACGAGTTTTGAAATGGACTTATGCATATGGATATTACCTGCCAGAACAGGAGCAAGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCTGAGTCCGGATTAGAAAGGCTCCATCAATGCGCCGAAAAGGAACTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTTCGCACGAAGCTCGCTGGTCTTACCAGTGTTACTCGAAATTACTTTGAGAACCTGGTTAGAGCATTAGAGAATGGGCTTTCAGATGTGAACTCTCACGGAGCGAGTAGCTGCACAACAAGCTCGAAAAACACAGCAGGAAGTAGCAGTAAAGGAGGGAGAAGCGGACGGGGTAAGGGAATCAGTAGAACCAGCAGTTCGACCAGAAGCGGGGACAATGCAACTCATTGGTCGTGCGAACACTGTACCTTTGTGAACACCAGATCTGCTACCACATGCGAGATGTGCCATCATCGCCATTGA 1767 44.65 MDSEDDLHYSTDDDCDFYSGDMDMGMGGDYSDDDDPDAEDFVDDDNDDYFESRRREQNYTILNESAIRQRQEDDVTRISSVLSISRVASVVLLRHFNWSVTKVHDEWFADEARVRKQVGLLEAPVVHVLNARERNCGICFESYPNSRIKSAACGHPFCASCWAGYITTSINDGPGCLTLRCPDPSCGAVVGQDMINSLTSNEDREKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVACLCTYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKALADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEQAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSCTTSSKNTAGSSSKGGRSGRGKGISRTSSSTRSGDNATHWSCEHCTFVNTRSATTCEMCHHRH 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 55936459 55945156 + Hsped.03g10200.1 Hepe03g1020 566018

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1020 588 SUPERFAMILY RING/U-box 286 334 - -
Hepe03g1020 588 ProSitePatterns Zinc finger RanBP2-type signature. 565 584 IPR001876 -
Hepe03g1020 588 ProSiteProfiles Zinc finger RING-type profile. 136 182 IPR001841 -
Hepe03g1020 588 MobiDBLite consensus disorder prediction 27 46 - -
Hepe03g1020 588 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 69 108 IPR048962 -
Hepe03g1020 588 Coils Coil 353 373 - -
Hepe03g1020 588 MobiDBLite consensus disorder prediction 1 19 - -
Hepe03g1020 588 FunFam RBR-type E3 ubiquitin transferase 268 518 - -
Hepe03g1020 588 Pfam IBR domain 289 329 - -
Hepe03g1020 588 ProSiteProfiles Zinc finger RanBP2 type profile. 557 588 IPR001876 -
Hepe03g1020 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 217 IPR013083 -
Hepe03g1020 588 Gene3D - 263 518 - -
Hepe03g1020 588 MobiDBLite consensus disorder prediction 521 562 - -
Hepe03g1020 588 SMART ibrneu5 205 267 IPR002867 GO:0008270(InterPro)
Hepe03g1020 588 SMART ibrneu5 271 341 IPR002867 GO:0008270(InterPro)
Hepe03g1020 588 Pfam IBR domain, a half RING-finger domain 205 267 IPR002867 GO:0008270(InterPro)
Hepe03g1020 588 CDD Rcat_RBR_ARI7-like 290 344 - -
Hepe03g1020 588 FunFam RBR-type E3 ubiquitin transferase 130 219 - -
Hepe03g1020 588 SUPERFAMILY Ran binding protein zinc finger-like 561 586 IPR036443 -
Hepe03g1020 588 CDD RING-HC_ARI6-like 133 194 - -
Hepe03g1020 588 SUPERFAMILY RING/U-box 133 214 - -
Hepe03g1020 588 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 81 392 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Hepe03g1020 588 SUPERFAMILY RING/U-box 205 274 - -
Hepe03g1020 588 SMART zf_4 563 587 IPR001876 -
Hepe03g1020 588 Pfam Ariadne domain 354 540 IPR045840 -
Hepe03g1020 588 MobiDBLite consensus disorder prediction 1 46 - -
Hepe03g1020 588 ProSiteProfiles TRIAD supradomain profile. 132 345 IPR044066 -
Hepe03g1020 588 CDD BRcat_RBR_ANKIB1 212 276 - -
Hepe03g1020 588 MobiDBLite consensus disorder prediction 521 540 - -
Hepe03g1020 588 Gene3D - 558 588 - -
Hepe03g1020 588 MobiDBLite consensus disorder prediction 547 562 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1020 K11968 - - csv:101223037 1091.26
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1020 Hepe-Chr3:55936459 Hepe08g1932 Hepe-Chr8:51899510 2.43e-318 dispersed
Hepe08g1038 Hepe-Chr8:9999051 Hepe03g1020 Hepe-Chr3:55936459 1.64e-57 transposed
Hepe03g1020 Hepe-Chr3:55936459 Hepe08g1843 Hepe-Chr8:46164162 2.43e-318 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe08g1038 . 165 590 ARIADNE family AT4G34370 71.0 2.2e-181 632.1
Hepe08g1038 . 59 543 ARIADNE family AT2G16090 77.2 1.1e-224 776.2
Hepe08g1038 . 29 544 ARIADNE family AT3G27710 61.3 1.3e-183 639.8
Hepe08g1038 . 45 522 ARIADNE family AT3G27720 54.6 5.5e-144 508.1
Hepe08g1932 . 25 543 ARIADNE family AT1G05890 65.1 1.4e-221 766.1
Hepe08g1843 . 25 543 ARIADNE family AT1G05890 64.9 4.0e-221 764.6
Hepe03g1020 . 57 540 ARIADNE family AT1G05890 72.5 2.0e-217 752.3
Hepe08g1932 . 25 598 ARIADNE family AT1G65430 74.4 6.8e-263 903.3
Hepe08g1843 . 25 598 ARIADNE family AT1G65430 74.3 2.0e-262 901.7
Hepe03g1020 . 16 586 ARIADNE family AT1G65430 69.8 3.2e-244 841.3
Hepe08g1843 . 25 462 ARIADNE family AT2G31780 56.2 1.8e-149 526.2
Hepe08g1932 . 25 462 ARIADNE family AT2G31780 56.2 1.8e-149 526.2
Hepe03g1020 . 54 450 ARIADNE family AT2G31780 58.4 4.1e-146 515.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72