Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1020 ATGGATTCTGAGGACGATCTTCATTATTCCACCGACGACGATTGTGATTTCTACAGCGGCGATATGGATATGGGTATGGGCGGGGATTACAGCGATGACGATGATCCTGACGCTGAGGATTTTGTCGATGACGATAACGATGATTACTTCGAGTCCCGTCGACGCGAGCAAAATTATACCATACTAAATGAATCAGCTATAAGACAACGCCAAGAGGATGATGTCACGAGGATTTCTTCTGTACTTTCTATATCACGTGTAGCTTCAGTTGTCTTACTCCGCCACTTCAACTGGAGTGTTACTAAAGTCCACGATGAATGGTTTGCTGATGAAGCTCGAGTAAGGAAACAAGTTGGCTTGTTGGAAGCACCTGTTGTACATGTCCTAAATGCTAGAGAACGTAACTGTGGAATCTGTTTTGAGTCCTATCCAAATAGTAGGATCAAGTCAGCCGCCTGTGGTCATCCTTTCTGTGCCTCCTGCTGGGCAGGTTACATTACCACATCAATTAATGATGGTCCTGGATGTCTGACGTTGAGATGTCCTGATCCTTCTTGCGGTGCTGTGGTTGGTCAAGATATGATTAATTCGTTGACCTCCAATGAAGACAGGGAGAAATATGCTCGTTACCTTCTTAGGTCTTATGTTGAAGACAACAAAAAGACTAAATGGTGCCCAGCACCTGGTTGTGAGCATGCTGTTCTCTTTGATGCTGGCAATGGAAACTATGATGTAGCTTGCCTCTGCACATATGGCTTTTGCTGGAATTGCACAGAAGAAGCTCACCGTCCTGTAGATTGTGCTACTGTAGAAAAATGGATTTTAAAGAACAGTGCTGAGTCTGAAAACATGAACTGGATATTAGCTAATTCCAAGCCTTGTCCAAAGTGCAAGCGACCAATTGAGAAAAATCAAGGGTGCATGCACATGACTTGCACACCTCCGTGTAAATTTGAATTTTGCTGGCTATGTCTTGGTGCATGGTCCGATCATGGTGAAAGAACTGGTGGCTTCTATGCTTGCAACCGATATGAGGTAGCTAAGCAAGATGGTGTGTATGATGAGGCTGAGAAAAGAAGAGAAATGGCGAAGAATTCTTTGGAGAGATACACTCACTATTATGAACGTTGGGCAAGCAATCAAACATCTAGGCAAAAAGCACTAGCAGATTTGCATCAAATGCAGAATGTGCATATTGAGAAGCTCAGTGATATCCACTGCACTCCTGAGTCCCAGCTAAAGTTCATAACAGAGGCTTGGTTACAGATAATTGAGTGTAGACGAGTTTTGAAATGGACTTATGCATATGGATATTACCTGCCAGAACAGGAGCAAGCCAAGAGACAGTTTTTTGAGTATTTGCAAGGTGAGGCTGAGTCCGGATTAGAAAGGCTCCATCAATGCGCCGAAAAGGAACTACTCCAGTTCCTCAATGCAGAAGGTCCATCAAAAGAATTTAACGACTTTCGCACGAAGCTCGCTGGTCTTACCAGTGTTACTCGAAATTACTTTGAGAACCTGGTTAGAGCATTAGAGAATGGGCTTTCAGATGTGAACTCTCACGGAGCGAGTAGCTGCACAACAAGCTCGAAAAACACAGCAGGAAGTAGCAGTAAAGGAGGGAGAAGCGGACGGGGTAAGGGAATCAGTAGAACCAGCAGTTCGACCAGAAGCGGGGACAATGCAACTCATTGGTCGTGCGAACACTGTACCTTTGTGAACACCAGATCTGCTACCACATGCGAGATGTGCCATCATCGCCATTGA 1767 44.65 MDSEDDLHYSTDDDCDFYSGDMDMGMGGDYSDDDDPDAEDFVDDDNDDYFESRRREQNYTILNESAIRQRQEDDVTRISSVLSISRVASVVLLRHFNWSVTKVHDEWFADEARVRKQVGLLEAPVVHVLNARERNCGICFESYPNSRIKSAACGHPFCASCWAGYITTSINDGPGCLTLRCPDPSCGAVVGQDMINSLTSNEDREKYARYLLRSYVEDNKKTKWCPAPGCEHAVLFDAGNGNYDVACLCTYGFCWNCTEEAHRPVDCATVEKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEVAKQDGVYDEAEKRREMAKNSLERYTHYYERWASNQTSRQKALADLHQMQNVHIEKLSDIHCTPESQLKFITEAWLQIIECRRVLKWTYAYGYYLPEQEQAKRQFFEYLQGEAESGLERLHQCAEKELLQFLNAEGPSKEFNDFRTKLAGLTSVTRNYFENLVRALENGLSDVNSHGASSCTTSSKNTAGSSSKGGRSGRGKGISRTSSSTRSGDNATHWSCEHCTFVNTRSATTCEMCHHRH 588
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 55936459 55945156 + Hsped.03g10200.1 Hepe03g1020 566018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1020 588 SUPERFAMILY RING/U-box 286 334 - -
Hepe03g1020 588 ProSitePatterns Zinc finger RanBP2-type signature. 565 584 IPR001876 -
Hepe03g1020 588 ProSiteProfiles Zinc finger RING-type profile. 136 182 IPR001841 -
Hepe03g1020 588 MobiDBLite consensus disorder prediction 27 46 - -
Hepe03g1020 588 Pfam E3 ubiquitin-protein ligase ARIH1, UBA-like domain 69 108 IPR048962 -
Hepe03g1020 588 Coils Coil 353 373 - -
Hepe03g1020 588 MobiDBLite consensus disorder prediction 1 19 - -
Hepe03g1020 588 FunFam RBR-type E3 ubiquitin transferase 268 518 - -
Hepe03g1020 588 Pfam IBR domain 289 329 - -
Hepe03g1020 588 ProSiteProfiles Zinc finger RanBP2 type profile. 557 588 IPR001876 -
Hepe03g1020 588 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 217 IPR013083 -
Hepe03g1020 588 Gene3D - 263 518 - -
Hepe03g1020 588 MobiDBLite consensus disorder prediction 521 562 - -
Hepe03g1020 588 SMART ibrneu5 205 267 IPR002867 GO:0008270(InterPro)
Hepe03g1020 588 SMART ibrneu5 271 341 IPR002867 GO:0008270(InterPro)
Hepe03g1020 588 Pfam IBR domain, a half RING-finger domain 205 267 IPR002867 GO:0008270(InterPro)
Hepe03g1020 588 CDD Rcat_RBR_ARI7-like 290 344 - -
Hepe03g1020 588 FunFam RBR-type E3 ubiquitin transferase 130 219 - -
Hepe03g1020 588 SUPERFAMILY Ran binding protein zinc finger-like 561 586 IPR036443 -
Hepe03g1020 588 CDD RING-HC_ARI6-like 133 194 - -
Hepe03g1020 588 SUPERFAMILY RING/U-box 133 214 - -
Hepe03g1020 588 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 81 392 IPR031127 GO:0000151(PANTHER)|GO:0000209(PANTHER)|GO:0004842(InterPro)|GO:0005737(PANTHER)|GO:0006511(PANTHER)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0032436(PANTHER)|GO:0061630(PANTHER)
Hepe03g1020 588 SUPERFAMILY RING/U-box 205 274 - -
Hepe03g1020 588 SMART zf_4 563 587 IPR001876 -
Hepe03g1020 588 Pfam Ariadne domain 354 540 IPR045840 -
Hepe03g1020 588 MobiDBLite consensus disorder prediction 1 46 - -
Hepe03g1020 588 ProSiteProfiles TRIAD supradomain profile. 132 345 IPR044066 -
Hepe03g1020 588 CDD BRcat_RBR_ANKIB1 212 276 - -
Hepe03g1020 588 MobiDBLite consensus disorder prediction 521 540 - -
Hepe03g1020 588 Gene3D - 558 588 - -
Hepe03g1020 588 MobiDBLite consensus disorder prediction 547 562 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1020 Hepe-Chr3:55936459 Hepe08g1932 Hepe-Chr8:51899510 2.43e-318 dispersed
Hepe08g1038 Hepe-Chr8:9999051 Hepe03g1020 Hepe-Chr3:55936459 1.64e-57 transposed
Hepe03g1020 Hepe-Chr3:55936459 Hepe08g1843 Hepe-Chr8:46164162 2.43e-318 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1020 K11968 - csv:101223037 1091.26