Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1048 ATGTATAGGAAAACATGTTTTGGTCCACTACTGGACGTGAATTTGATATTCAATGGCCAGTTGGTTCATCACCTCATGCTTAGGGAAGTGGAAGAAGTTAGAGTTGGCGTCATAAATTTTTGTATTTTGGGAAAGAAGGCAACCTTTTCCAGGGAGGATTTCAACATCATCACTGGTCTATGGTCTCCTACTCTCACGGAGGTGAACAGAAAAACTAATAGTAGTCGATTGATGCAAATTTTATTTCCACCAACTGAGGAAAATATATATGCAAAAGACTTGGAGTTGAAGTACAAGAGTTGTCAGTTTGAGAATGATGAAGATGTTGTGAAGATTTCTCTTGTACTTTTTATTGAGTTGGCCATGATGGGTAAAGATAAAAAGACTCTACTGGACTTGTCTGTCTTTGGCATAGTTGATGATTGA 426 37.79 MYRKTCFGPLLDVNLIFNGQLVHHLMLREVEEVRVGVINFCILGKKATFSREDFNIITGLWSPTLTEVNRKTNSSRLMQILFPPTEENIYAKDLELKYKSCQFENDEDVVKISLVLFIELAMMGKDKKTLLDLSVFGIVDD 141
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 57333836 57334261 - Hsped.03g10480.1 Hepe03g1048 566046

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1048 141 PANTHER DUF1985 DOMAIN-CONTAINING PROTEIN 3 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1048 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1048 Hepe-Chr3:57333836 Hepe03g1146 Hepe-Chr3:64738795 1.29e-93 dispersed
Hepe01g0132 Hepe-Chr1:19007995 Hepe03g1048 Hepe-Chr3:57333836 3.52e-10 wgd
Hepe03g1048 Hepe-Chr3:57333836 Hepe04g0134 Hepe-Chr4:36878027 2.94e-08 wgd
Hepe03g1048 Hepe-Chr3:57333836 Hepe04g0074 Hepe-Chr4:24090626 1.28e-89 wgd
Hepe03g1048 Hepe-Chr3:57333836 Hepe04g0145 Hepe-Chr4:38085901 1.40e-49 wgd
Hepe03g1048 Hepe-Chr3:57333836 Hepe04g0252 Hepe-Chr4:45588564 6.74e-36 wgd
Hepe03g1048 Hepe-Chr3:57333836 Hepe05g1171 Hepe-Chr5:57383977 8.38e-29 wgd
Hepe03g1048 Hepe-Chr3:57333836 Hepe08g1676 Hepe-Chr8:26544207 4.53e-94 wgd
Hepe03g1048 Hepe-Chr3:57333836 Hepe08g1658 Hepe-Chr8:25609940 2.62e-95 wgd
Hepe03g1048 Hepe-Chr3:57333836 Hepe09g1658 Hepe-Chr9:49784598 7.06e-33 wgd
Hepe03g1048 Hepe-Chr3:57333836 HepeContig65g0088 Hepe-ChrContig65:7071707 1.96e-29 wgd
Hepe03g1048 Hepe-Chr3:57333836 HepeContig66g0110 Hepe-ChrContig66:7252891 3.50e-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g284 . Blo12g00672 . . Bpe02g00072 . . Bma01g02646 Cmo04g02464 . . Cma09g00799 . . . . . Bhi04g01968 . . . Hepe03g1048 . . Cla08g00578 Cam08g0993 Cec08g0581 Cco08g0692 Clacu08g0702 . Cre08g0513 . . . . . Csa04g01808 . Cme03g00574 Blo17g00181 . . . . . . . . . Cmo09g00792 . . . Car09g00716 . . Bhi09g02666 . . . . Mch11g0824 . . . . . . . . Lsi08g00420 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002688 0 12 0 0 0 0 0 1 1 0 2 0 0 0 2 0 1 0 0 0 0 0 26 0 0 0 1 0 0 0 46