Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1068 ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCTGCGCTTTGTGCCAAATGCGATGTTGAAGTTCATGCTGCCAATAAGCTTGCCAGCAAACACCAGAGGCTTCTTCTTCACTGCCTCTCCACTAAGCTCCCCAAATGCGATATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGACGAACCAATTCACTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCTCGAAGGACGTTGACAAGGTCAAGATGGAACCTCCGAATCCGAAGAACCCTCAGGTTTCTGCTAAAATGCCACCTTCACAACAAGTTCCTAACTTCACATCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTCGAGTCCTCTGACAAGCAGAAAGAACACCTAGAGTTTGGAGAATTAGAATGGCTAGCAGAAATGGGGCTCTTTGGCGAGCAAGTTCCTGAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTGGTGCATTCGCATGCAGACCGACGAAGTCGAGCATGTTGTACAAAAAGCCTAGGATCGAGGTGGTAGACGACGAGGAGTTTTTTACCGTTCCTGATCTTGGATGA 717 47.14 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLHCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCSKDVDKVKMEPPNPKNPQVSAKMPPSQQVPNFTSPWAVDDFLHFSDLESSDKQKEHLEFGELEWLAEMGLFGEQVPEEALAAAEVPELPTSHSGGAFACRPTKSSMLYKKPRIEVVDDEEFFTVPDLG 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 60426425 60429260 - Hsped.03g10680.1 Hepe03g1068 566066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1068 238 CDD Bbox1_BBX-like 56 98 IPR049808 -
Hepe03g1068 238 MobiDBLite consensus disorder prediction 115 137 - -
Hepe03g1068 238 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270(InterPro)
Hepe03g1068 238 Pfam B-box zinc finger 3 45 IPR000315 GO:0008270(InterPro)
Hepe03g1068 238 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Hepe03g1068 238 CDD Bbox1_BBX-like 5 47 IPR049808 -
Hepe03g1068 238 Gene3D Classic Zinc Finger 1 94 - -
Hepe03g1068 238 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Hepe03g1068 238 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Hepe03g1068 238 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Hepe03g1068 238 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1068 Hepe-Chr3:60426425 Hepe07g0957 Hepe-Chr7:12812874 2.43e-41 dispersed
Hepe03g1068 Hepe-Chr3:60426425 Hepe01g1643 Hepe-Chr1:81637092 1.65e-34 transposed
Hepe03g1068 Hepe-Chr3:60426425 Hepe10g0125 Hepe-Chr10:1269043 3.05e-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55261 PF00643 zf-B_box 6.70E-08 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1068 - - - 0.0