Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1068 ATGAAAATTCAGTGTGATGTTTGTGAGAAAGCTCCTGCTACTGTGATTTGTTGTGCGGATGAAGCTGCGCTTTGTGCCAAATGCGATGTTGAAGTTCATGCTGCCAATAAGCTTGCCAGCAAACACCAGAGGCTTCTTCTTCACTGCCTCTCCACTAAGCTCCCCAAATGCGATATATGCCAAGACAAGGCGGCTTTCATTTTCTGTGTTGAAGACAGAGCACTATTTTGTCAAGATTGTGACGAACCAATTCACTCAACTGGTAGTCTTTCAGCAAACCACCAGAGGTTCCTAGCCACTGGAATCAGAGTGGCCATGAGCTCAAGTTGCTCGAAGGACGTTGACAAGGTCAAGATGGAACCTCCGAATCCGAAGAACCCTCAGGTTTCTGCTAAAATGCCACCTTCACAACAAGTTCCTAACTTCACATCCCCATGGGCTGTTGATGACTTTCTCCACTTCTCTGATCTCGAGTCCTCTGACAAGCAGAAAGAACACCTAGAGTTTGGAGAATTAGAATGGCTAGCAGAAATGGGGCTCTTTGGCGAGCAAGTTCCTGAAGAAGCTTTAGCTGCTGCTGAAGTTCCTGAGCTTCCTACATCACACTCAGGTGGTGCATTCGCATGCAGACCGACGAAGTCGAGCATGTTGTACAAAAAGCCTAGGATCGAGGTGGTAGACGACGAGGAGTTTTTTACCGTTCCTGATCTTGGATGA 717 47.14 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLHCLSTKLPKCDICQDKAAFIFCVEDRALFCQDCDEPIHSTGSLSANHQRFLATGIRVAMSSSCSKDVDKVKMEPPNPKNPQVSAKMPPSQQVPNFTSPWAVDDFLHFSDLESSDKQKEHLEFGELEWLAEMGLFGEQVPEEALAAAEVPELPTSHSGGAFACRPTKSSMLYKKPRIEVVDDEEFFTVPDLG 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 60426425 60429260 - Hsped.03g10680.1 Hepe03g1068 566066

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1068 238 CDD Bbox1_BBX-like 56 98 IPR049808 -
Hepe03g1068 238 MobiDBLite consensus disorder prediction 115 137 - -
Hepe03g1068 238 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270(InterPro)
Hepe03g1068 238 Pfam B-box zinc finger 3 45 IPR000315 GO:0008270(InterPro)
Hepe03g1068 238 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270(InterPro)
Hepe03g1068 238 CDD Bbox1_BBX-like 5 47 IPR049808 -
Hepe03g1068 238 Gene3D Classic Zinc Finger 1 94 - -
Hepe03g1068 238 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Hepe03g1068 238 SMART bboxneu5 52 99 IPR000315 GO:0008270(InterPro)
Hepe03g1068 238 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Hepe03g1068 238 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1068 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1068 Hepe-Chr3:60426425 Hepe07g0957 Hepe-Chr7:12812874 2.43e-41 dispersed
Hepe03g1068 Hepe-Chr3:60426425 Hepe01g1643 Hepe-Chr1:81637092 1.65e-34 transposed
Hepe03g1068 Hepe-Chr3:60426425 Hepe10g0125 Hepe-Chr10:1269043 3.05e-34 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0005 . 1 377 Orphan Transcription Factor Family AT5G61850 69.2 3.3e-129 458.8
Hepe03g1068 . 1 168 Orphan Transcription Factor Family AT1G06040 66.7 8.9e-60 226.9
Hepe07g0957 . 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.1e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009070 1 2 2 1 2 1 2 0 0 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55261 PF00643 zf-B_box 6.70E-08 No_clan Hepe TF