Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1070 ATGCCTCCTCCTCCCAAACTGAGCCGTCAACAACTGCACAGGGATTCGGACGTTGCGGATATGCCTTCCAACAGCTTGTGGGTCGGCAACTTGTCCATGGATGTCACCGATGCGGATCTCATGAATATGTTTGCGCAGTTTGGTGCTCTTGATAGTGTTACTTCCTATTCCTCCAGGAGCTACGCTTTCATCTTCTTCAAGCATATGGAGGATGCCCAAGCCGCTAAGGAGGCTCTTCAGGGCGTTTTTCTGCGTGGGAATTCTATCAAGATCGAGTTTGCGAGACCGGCCAAACCTTGTAGGAATTTGTGGGTGGGTGGTATTAGCCCAGCTGTTTCAAGGGAACAACTTGAAGAAGAATTTGCAAAATTTGGTAAAATTGATGAATTTAAGTTTTTGCGAGATCGGAATACTGCATTTGTTGAGTATGTTCGATTGGAAGATGCATCACAAGCTTTGAGAATTATGAATGGGAAACGCCTTGGTGGAGACCAGATTCGAGTTGATTTTCTTCGGTCACAGCCAATGAGAAGAGATCAGTGGCCTGACTCCAGAGATGGGCATGGACATGGGCATGGACAGCTTCAGGGTAGAAATGTGGGGATGGGTGATTTCCAATCTGGTTATAAAAGACCGCTGCATACTCAATCTTCAGAAGTGCGTAGAGATGGACCTCCCAGTAAGGTTTTGTGGATTGGTTACCCTCCACCTGTTCAAATTGATGAACAAATGCTCCACAATGCGATGATTTTATTTGGTGAGATAGAGAGAATTACGAGTTTCCATTCTAGGCATTTTGCATTTGTAGAATTTAGAAGTGTTGATGAAGCGCGGCGTGCTAAGGAAGGTCTACAAGGACGGCTATTTAATGATCCTCGGATTACCATTATGTTTTCAAACAGTGATCCGGCACCTGTAAAAGAGCACCCTGGCTTTTATCCTGGTGGTAAAGAGACTAGGCCTGAAATGTTCTTCAATGAGCATCAAATCCGTCCTCCACAAATGGACATGATGGGACATCCTCACCCAATGGTGCAAAATAAGTTTCCTGGACCATTGCCAGCTAGTGGCATTCTTGGACCAAATACAGCAGTAAGACCACCACCCTTTGGTCCTCCACAGGGTATCTCAGGCCCCCCTGAGTTTAATGACTTGGCGACATCTCATGGTTTCCAGGATTCAAATCCAAAAAATATGATGGGTCCAAATTGGAGAAGGCAATCTCCTCCTGCACCTGGAATACTTTCTTCTCCAGCTACTGGTATTCGTCCACCTCCACCAGTGAGGTCCACTCCAAACTCTTGGGACATTTTGGATGTAAACCAATTCCAAAGGGATTCTAAACGATCAAGGATAGATGGTCCAACATCCTTAGACGATGCTTCTTTTCCTCCAAGAAAAATGGATAACCGGGGCATGGGTTTTGATCAGCAATATGGGGTTGGTCCAATAAGTGATGGAGGTTCTTCTGTTCCATATGCCAATGCTCCAGCGAAGACTCATGCTATTCCTATAGGTGCAAGGGCCCCAGTCAGTGGTCCTGGCCAGAGTCATGCTGACAACGATTTCATATGGCGTGGAATAATTGCCAAGGGAGGAACGCCTGTTTGTCATGCTCGTTGTGTCCCAATAGGCGAAGGAGTAGGAAGTGAGCTTCCTGAAGTAGTCAATTGTTCAGCAAGAACTGGGCTGGATCAGCTCACTAAACATTATGCTGAAGCCACCGGATTCGACATAGTCTTTTTCTTGCCAGATAGCGAGGATGATTTTGCATCCTATACAGAATTCCTGCGTTACCTAGGTGCAAAAAACCGTGCAGGTGTTGCTAAGTTTGATGATGGAACTACAATGTTTTTGGTTCCTCCTTCTGAGTTTTTGAGAAAAGTTTTGAAAGTTGCTGGTCCAGAAAGGCTTTATGGTCTTGTCCTCAAATTTCCTCAGGTGATTAGTGAACCTACTCACCAACAATCATATCTACCCATTCCTACATCTGAGTATGGTGAGAGACAGCAAGTTTCGTCTTCACAAACTGAATATGGGTCAGTGCCTTCGAAGCAGGAGCAACTTCCTCCAATGGACTATAAAAGGGTTTTGCACGAGGAAACCAAGGAGCCCCCGAAACCACATCTACCCGCAAGTGAGCCACCAGCAGTTCAGCCTTTGCCTCAAGAGTATGTTACTAACAATAATACGGCGGCAATCTCACAAGCTGGGTTAGGATTAACACCAGAGCTTATTGCCACCTTGGTTTCTTTACTGCCTGGTAAGACACAGTCATCCAGTTTAGAAAGTGCCAAACAAACAGCAGTCTCACCACAACCTCCAATTCCTCCTGTCCTTTCTAATAAAGGGACTACCTCTGAGGGATGGATGGTAGGTCATCAATCTTCTGATCTAACCGGTCCACCATTTCAGCAAATGGGAAATCATTTTAATCATCAGGGACCGAGTTTCCCTCAATTTCAGCCTTATCCACCTCTCCCTCAAACACCTAACCAGCTTGCACCACAGGTCATGGGAACAACCCAAATCCAAGATGCTGCTGTCAGTCTACCACAGCAGCAGCAGGTACCTATTCCTTACAGGCCTTTGTCTACTTATTCTGCCCCTCCTGAAAATGTGCAAGCTTCTGGTTTGCCCTCGGTCAATTCTCAGTATCAGCATGATGTTTCTCAAATTAGCCAGAGAGGTTATGGGTCAGTTAATGGGGTTGATACTTCTGGGTATGGTCCACCAGTTATGCATCAATCAACAAATACTGGGACCTTATCTAATCAAAGTCAGGGTTCTACAACACAGTCATCACAACCTATTACTCAATTAGCATCTGATAGGGTAAACCCTGAGCTTCCATATCAGATGCAACATATGCAATCTGCAAACCTTGGCACTGGCAATGGGACCAGTGATGTTGAGGCAGGTAAGGACCAGAGATATCGATCTACACTCCAATTTGCCGCCAATTTACTCCTCCAGATCCAGCAGCAGCAGCAAGCAGGTTGGGGTCCAGGAAATCAACAATGA 3024 45.73 MPPPPKLSRQQLHRDSDVADMPSNSLWVGNLSMDVTDADLMNMFAQFGALDSVTSYSSRSYAFIFFKHMEDAQAAKEALQGVFLRGNSIKIEFARPAKPCRNLWVGGISPAVSREQLEEEFAKFGKIDEFKFLRDRNTAFVEYVRLEDASQALRIMNGKRLGGDQIRVDFLRSQPMRRDQWPDSRDGHGHGHGQLQGRNVGMGDFQSGYKRPLHTQSSEVRRDGPPSKVLWIGYPPPVQIDEQMLHNAMILFGEIERITSFHSRHFAFVEFRSVDEARRAKEGLQGRLFNDPRITIMFSNSDPAPVKEHPGFYPGGKETRPEMFFNEHQIRPPQMDMMGHPHPMVQNKFPGPLPASGILGPNTAVRPPPFGPPQGISGPPEFNDLATSHGFQDSNPKNMMGPNWRRQSPPAPGILSSPATGIRPPPPVRSTPNSWDILDVNQFQRDSKRSRIDGPTSLDDASFPPRKMDNRGMGFDQQYGVGPISDGGSSVPYANAPAKTHAIPIGARAPVSGPGQSHADNDFIWRGIIAKGGTPVCHARCVPIGEGVGSELPEVVNCSARTGLDQLTKHYAEATGFDIVFFLPDSEDDFASYTEFLRYLGAKNRAGVAKFDDGTTMFLVPPSEFLRKVLKVAGPERLYGLVLKFPQVISEPTHQQSYLPIPTSEYGERQQVSSSQTEYGSVPSKQEQLPPMDYKRVLHEETKEPPKPHLPASEPPAVQPLPQEYVTNNNTAAISQAGLGLTPELIATLVSLLPGKTQSSSLESAKQTAVSPQPPIPPVLSNKGTTSEGWMVGHQSSDLTGPPFQQMGNHFNHQGPSFPQFQPYPPLPQTPNQLAPQVMGTTQIQDAAVSLPQQQQVPIPYRPLSTYSAPPENVQASGLPSVNSQYQHDVSQISQRGYGSVNGVDTSGYGPPVMHQSTNTGTLSNQSQGSTTQSSQPITQLASDRVNPELPYQMQHMQSANLGTGNGTSDVEAGKDQRYRSTLQFAANLLLQIQQQQQAGWGPGNQQ 1007
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 60556255 60570433 - Hsped.03g10700.1 Hepe03g1070 566068

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1070 1007 MobiDBLite consensus disorder prediction 911 939 - -
Hepe03g1070 1007 PANTHER RNA RECOGNITION MOTIF-CONTAINING 195 678 - -
Hepe03g1070 1007 MobiDBLite consensus disorder prediction 410 434 - -
Hepe03g1070 1007 CDD SPOC_FPA-like 524 644 - -
Hepe03g1070 1007 MobiDBLite consensus disorder prediction 666 684 - -
Hepe03g1070 1007 SUPERFAMILY RNA-binding domain, RBD 22 177 IPR035979 GO:0003676(InterPro)
Hepe03g1070 1007 Pfam RNA recognition motif 240 294 IPR000504 GO:0003723(InterPro)
Hepe03g1070 1007 Pfam RNA recognition motif 26 90 IPR000504 GO:0003723(InterPro)
Hepe03g1070 1007 Pfam RNA recognition motif 103 167 IPR000504 GO:0003723(InterPro)
Hepe03g1070 1007 SUPERFAMILY RNA-binding domain, RBD 223 307 IPR035979 GO:0003676(InterPro)
Hepe03g1070 1007 Gene3D - 6 97 IPR012677 -
Hepe03g1070 1007 MobiDBLite consensus disorder prediction 898 939 - -
Hepe03g1070 1007 CDD RRM_SF 26 92 - -
Hepe03g1070 1007 Gene3D - 98 211 IPR012677 -
Hepe03g1070 1007 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 228 301 IPR000504 GO:0003723(InterPro)
Hepe03g1070 1007 Pfam SPOC domain 516 643 IPR012921 -
Hepe03g1070 1007 Gene3D - 214 308 IPR012677 -
Hepe03g1070 1007 CDD RRM_SF 103 169 - -
Hepe03g1070 1007 MobiDBLite consensus disorder prediction 692 708 - -
Hepe03g1070 1007 MobiDBLite consensus disorder prediction 177 192 - -
Hepe03g1070 1007 FunFam Flowering time control protein FPA 16 98 - -
Hepe03g1070 1007 MobiDBLite consensus disorder prediction 666 721 - -
Hepe03g1070 1007 MobiDBLite consensus disorder prediction 177 201 - -
Hepe03g1070 1007 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 173 IPR000504 GO:0003723(InterPro)
Hepe03g1070 1007 CDD RRM_SF 230 297 - -
Hepe03g1070 1007 SMART rrm1_1 229 297 IPR000504 GO:0003723(InterPro)
Hepe03g1070 1007 SMART rrm1_1 25 92 IPR000504 GO:0003723(InterPro)
Hepe03g1070 1007 SMART rrm1_1 102 169 IPR000504 GO:0003723(InterPro)
Hepe03g1070 1007 MobiDBLite consensus disorder prediction 446 469 - -
Hepe03g1070 1007 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 96 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1070 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1070 Hepe-Chr3:60556255 Hepe08g0367 Hepe-Chr8:3289000 1.41e-68 dispersed
Hepe10g0593 Hepe-Chr10:7244793 Hepe03g1070 Hepe-Chr3:60556255 2.91e-06 dispersed
Hepe03g1070 Hepe-Chr3:60556255 Hepe07g0453 Hepe-Chr7:4693582 1.67e-14 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1273 Blo01g00191 Blo12g00264 . Bda08g00160 . . . . Cmo08g00197 Cmo17g00590 . . . . . . . . . . . . . . Cla06g00090 Cam06g0129 Cec06g0101 Cco06g0096 Clacu06g0101 Cmu06g0098 Cre06g0869 . . . . . . . . . . . . Bpe05g00972 . . . Sed01g0608 . . . . Car08g00176 Car17g00575 . Cpe17g01087 Bhi12g02504 Tan06g1561 Cmetu11g2454 . Hepe03g1070 . . . . . . . . . . . . Cme11g02454
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004428 1 4 2 0 1 1 2 1 1 1 1 1 2 1 2 2 1 2 1 1 1 1 1 1 1 1 1 3 2 1 41