Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1077 ATGGACATAACTTTTTTCACAGCCAAAGAAGCCCCCACAAGCTTCTTCAGCCAAAGCCATGATCATCATCATCATCATCACCTTCGTCATCTTCCCTTCTCCAACTTAGACATGCAAAGCTCCACTAGCCAGTCGTCGGAGTACTCGCCCGAACACTCTCCGTCCACCGCTGCCGCCACCGCCGCAGCCGGAAAATGGGCCTCCACCCTTCTCAAGGAGTGTGCTAAAGCCATCTCTGAAAAAGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTGGCCTCCCCTTATGGTGACTCCGATCAGAAATTGGCTTCCTACTTCTTGCAAGCTCTCTTCTGCAGGGCCACTGAAACTGGCCTCAATTGCTACAAAACCCTCGTCGCCGTCGCCGAGAAGAATCACTCCTTCGACTCCGCTCGCCGGCTGATCCTCAAGTTCCAAGAGGCAAGTCCATGGACGACATTCGGGCATGTGGCATCGAACGGTGCAATTCTCGAGGCCCTCGAGGGAGAATCCAAGCTCCACATCATCGACATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACACGCAATGATGACACTCCACATCTAAAGCTCACAGTGGTGACAACAACAACAATAGTGAAGTCTCTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTCGCAAGGCTAATGGGAGTCCCCTTCGAGTTCAATCCCATAACAAATCTCAACCAATTAACCGACCTCACAAATGAAGCCCTCAAAGTCGAAGAAGACGAAGCCATTGCAATAAATTGCATTGGAGCCTTAAGAAGAGTGAGAGTTGAAGAGAGAAACAATGTGATTTCAATGTTGAAGTCACTAAAGCCTCGAGTTTTGACAATTGTAGAGGAAGAAGCTGATTTGATAAGCTCAAAAAATGATTTTCTTAAGTGCTTTGAAGAGTGCCTTAGATTCTACACTCTCTACTTTGAGATGTTGGAAGAGAGCTTTGTGGCAACAAGCAATGAGAGATTGGCTTTGGAAAGAGAGTGTTCAAGAAGCATTGTGAGGCTTTTGGGGTGTGATGATAATAATGAAAGTGAAGGAGAAATAATGGGGAGTGAGAGAAGAGAAAGAGGAAAGCAATGGAGCAAAAGGCTCAAAGAAGCAGCCTTTTCATCACCTGGATTTAGTGAAGATGTGATGGATGATGTTAAGGCTTTGCTCAAGAGGTACAAACCCGGTTGGGCGGTTCTGCGTCGGCCGGCCGCCACCACCACCGCCACCGGATCCGAAGAAGAAGATGGTGATGATTCAAGTGGAATTTACTTGACATGGAAGGAAGAACCAGTGGTGTGGGTTTCAGCATGGAAACCCTAG 1380 47.39 MDITFFTAKEAPTSFFSQSHDHHHHHHLRHLPFSNLDMQSSTSQSSEYSPEHSPSTAAATAAAGKWASTLLKECAKAISEKDSNKIHHFLWMLNELASPYGDSDQKLASYFLQALFCRATETGLNCYKTLVAVAEKNHSFDSARRLILKFQEASPWTTFGHVASNGAILEALEGESKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLNQLTDLTNEALKVEEDEAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTIVEEEADLISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLALERECSRSIVRLLGCDDNNESEGEIMGSERRERGKQWSKRLKEAAFSSPGFSEDVMDDVKALLKRYKPGWAVLRRPAATTTATGSEEEDGDDSSGIYLTWKEEPVVWVSAWKP 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 60769915 60771786 - Hsped.03g10770.1 Hepe03g1077 566075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1077 459 ProSiteProfiles GRAS family profile. 58 458 IPR005202 -
Hepe03g1077 459 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 457 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Hepe03g1077 459 Pfam GRAS domain family 69 458 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1077 K27743 - - csv:101206730 761.911
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0199 Hepe-Chr2:2036986 Hepe03g1077 Hepe-Chr3:60769915 5.75e-53 dispersed
Hepe03g1077 Hepe-Chr3:60769915 Hepe04g1315 Hepe-Chr4:68769049 3.00e-144 dispersed
Hepe03g1077 Hepe-Chr3:60769915 Hepe06g0540 Hepe-Chr6:30762455 3.12e-42 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g0168 . 42 749 GRAS Transcription Factor Family AT2G37650 53.2 4.3e-198 688.3
Hepe03g0643 . 289 736 GRAS Transcription Factor Family AT2G45160 54.3 6.8e-110 395.2
Hepe10g1249 . 307 681 GRAS Transcription Factor Family AT3G46600 55.5 7.1e-124 441.4
Hepe05g0168 . 285 749 GRAS Transcription Factor Family AT3G46600 50.3 8.7e-122 434.5
Hepe04g1304 . 66 476 GRAS Transcription Factor Family AT3G49950 61.1 3.4e-139 491.9
Hepe06g1136 . 423 795 GRAS Transcription Factor Family AT3G60630 50.9 2.5e-93 340.1
Hepe07g0684 . 83 531 GRAS Transcription Factor Family AT4G36710 53.6 1.5e-125 446.8
Hepe07g0886 . 68 446 GRAS Transcription Factor Family AT5G41920 69.9 1.4e-148 523.1
Hepe04g0646 . 443 835 GRAS Transcription Factor Family AT5G41920 55.5 2.6e-115 412.5
Hepe04g1503 . 1 613 GRAS Transcription Factor Family AT5G66770 56.6 5.0e-176 614.8
Hepe07g0671 . 1 587 GRAS Transcription Factor Family AT5G66770 56.2 6.3e-171 597.8
Hepe08g0397 . 57 545 GRAS Transcription Factor Family AT1G50600 58.6 5.3e-161 564.7
Hepe06g0540 . 46 545 GRAS Transcription Factor Family AT1G50600 56.9 6.5e-159 557.8
Hepe04g1711 . 111 549 GRAS Transcription Factor Family AT1G50600 56.4 4.4e-139 491.9
Hepe01g1320 . 213 583 GRAS Transcription Factor Family AT1G50600 62.3 8.5e-135 477.6
Hepe10g1981 . 193 573 GRAS Transcription Factor Family AT1G50600 50.4 1.4e-108 390.6
Hepe02g2646 . 40 574 GRAS Transcription Factor Family AT1G14920 69.1 1.1e-209 726.5
Hepe02g2393 . 54 577 GRAS Transcription Factor Family AT1G14920 62.2 5.2e-180 627.9
Hepe02g0993 . 29 544 GRAS Transcription Factor Family AT1G14920 58.1 6.8e-164 574.3
Hepe02g2393 . 54 578 GRAS Transcription Factor Family AT1G66350 62.5 2.0e-176 615.9
Hepe02g2646 . 42 572 GRAS Transcription Factor Family AT1G66350 59.6 2.5e-171 599.0
Hepe02g0993 . 1 548 GRAS Transcription Factor Family AT1G66350 57.4 7.4e-168 587.4
Hepe08g0779 . 222 746 GRAS Transcription Factor Family AT1G07520 51.5 2.1e-141 499.6
Hepe08g0397 . 99 545 GRAS Transcription Factor Family AT5G48150 72.4 1.2e-191 666.4
Hepe06g0540 . 17 545 GRAS Transcription Factor Family AT5G48150 58.2 1.4e-171 599.7
Hepe04g1711 . 16 549 GRAS Transcription Factor Family AT5G48150 51.5 1.2e-146 516.9
Hepe10g1981 . 182 573 GRAS Transcription Factor Family AT5G48150 53.8 1.5e-120 430.3
Hepe10g1983 . 1 144 GRAS Transcription Factor Family AT5G48150 53.5 1.7e-44 177.6
Hepe02g2646 . 44 571 GRAS Transcription Factor Family AT2G01570 70.0 2.1e-214 742.3
Hepe02g2393 . 56 575 GRAS Transcription Factor Family AT2G01570 62.5 3.0e-181 632.1
Hepe02g0993 . 28 544 GRAS Transcription Factor Family AT2G01570 60.0 7.0e-170 594.3
Hepe02g2393 . 54 578 GRAS Transcription Factor Family AT1G66350 62.5 2.0e-176 615.9
Hepe02g2646 . 42 572 GRAS Transcription Factor Family AT1G66350 59.6 2.5e-171 599.0
Hepe02g0993 . 1 548 GRAS Transcription Factor Family AT1G66350 57.4 7.4e-168 587.4
Hepe02g2393 . 56 575 GRAS Transcription Factor Family AT3G03450 61.8 4.4e-174 608.2
Hepe02g2646 . 44 571 GRAS Transcription Factor Family AT3G03450 60.0 1.6e-171 599.7
Hepe02g0993 . 28 544 GRAS Transcription Factor Family AT3G03450 60.6 3.7e-165 578.6
Hepe02g2393 . 55 576 GRAS Transcription Factor Family AT5G17490 59.0 5.3e-161 564.7
Hepe02g2646 . 40 571 GRAS Transcription Factor Family AT5G17490 57.6 1.2e-157 553.5
Hepe02g0993 . 29 550 GRAS Transcription Factor Family AT5G17490 55.6 1.7e-146 516.5
Hepe10g1981 . 1 573 GRAS Transcription Factor Family AT1G21450 57.3 7.5e-172 600.9
Hepe06g0540 . 170 545 GRAS Transcription Factor Family AT1G21450 53.8 3.8e-115 412.5
Hepe10g1983 . 1 144 GRAS Transcription Factor Family AT1G21450 73.8 3.0e-59 226.9
Hepe05g0168 . 301 749 GRAS Transcription Factor Family AT5G59450 50.4 5.1e-123 438.7
Hepe04g1711 . 56 549 GRAS Transcription Factor Family AT4G17230 61.4 2.0e-168 589.3
Hepe06g0540 . 50 545 GRAS Transcription Factor Family AT4G17230 51.7 1.7e-135 479.9
Hepe01g1320 . 209 583 GRAS Transcription Factor Family AT4G17230 51.5 1.1e-108 391.0
Hepe08g0397 . 134 545 GRAS Transcription Factor Family AT2G04890 67.6 1.9e-161 565.8
Hepe06g0540 . 171 545 GRAS Transcription Factor Family AT2G04890 64.5 6.7e-143 504.2
Hepe01g1320 . 213 583 GRAS Transcription Factor Family AT2G04890 59.6 2.0e-126 449.5
Hepe04g1711 . 169 549 GRAS Transcription Factor Family AT2G04890 58.0 3.8e-122 435.3
Hepe09g1143 . 1 472 GRAS Transcription Factor Family AT1G50420 65.8 2.8e-177 618.6
Hepe01g1006 . 1 462 GRAS Transcription Factor Family AT1G50420 60.8 1.2e-156 550.1
Hepe06g1136 . 432 795 GRAS Transcription Factor Family AT4G00150 55.7 7.5e-105 378.3
Hepe07g0671 . 1 587 GRAS Transcription Factor Family AT3G50650 57.3 3.9e-151 531.9
Hepe04g0646 . 180 833 GRAS Transcription Factor Family AT3G54220 62.5 4.4e-205 711.4
Hepe07g0886 . 82 447 GRAS Transcription Factor Family AT3G54220 62.8 3.1e-134 476.1
Hepe04g1315 . 74 499 GRAS Transcription Factor Family AT4G37650 65.3 1.8e-161 566.2
Hepe10g1414 . 143 531 GRAS Transcription Factor Family AT4G37650 58.4 2.8e-133 472.6
Hepe03g1077 . 65 459 GRAS Transcription Factor Family AT4G37650 51.2 8.1e-117 417.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010856 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55262 PF03514 GRAS 4.00E-94 CL0063 Hepe TF