Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1077 ATGGACATAACTTTTTTCACAGCCAAAGAAGCCCCCACAAGCTTCTTCAGCCAAAGCCATGATCATCATCATCATCATCACCTTCGTCATCTTCCCTTCTCCAACTTAGACATGCAAAGCTCCACTAGCCAGTCGTCGGAGTACTCGCCCGAACACTCTCCGTCCACCGCTGCCGCCACCGCCGCAGCCGGAAAATGGGCCTCCACCCTTCTCAAGGAGTGTGCTAAAGCCATCTCTGAAAAAGACTCCAACAAAATCCACCATTTTCTTTGGATGTTGAACGAGCTGGCCTCCCCTTATGGTGACTCCGATCAGAAATTGGCTTCCTACTTCTTGCAAGCTCTCTTCTGCAGGGCCACTGAAACTGGCCTCAATTGCTACAAAACCCTCGTCGCCGTCGCCGAGAAGAATCACTCCTTCGACTCCGCTCGCCGGCTGATCCTCAAGTTCCAAGAGGCAAGTCCATGGACGACATTCGGGCATGTGGCATCGAACGGTGCAATTCTCGAGGCCCTCGAGGGAGAATCCAAGCTCCACATCATCGACATAAGCAACACCCTTTGCACCCAATGGCCAACCCTACTAGAATCCCTAGCCACACGCAATGATGACACTCCACATCTAAAGCTCACAGTGGTGACAACAACAACAATAGTGAAGTCTCTAATGAAGGAAATAGGGCAAAGAATGGAGAAATTCGCAAGGCTAATGGGAGTCCCCTTCGAGTTCAATCCCATAACAAATCTCAACCAATTAACCGACCTCACAAATGAAGCCCTCAAAGTCGAAGAAGACGAAGCCATTGCAATAAATTGCATTGGAGCCTTAAGAAGAGTGAGAGTTGAAGAGAGAAACAATGTGATTTCAATGTTGAAGTCACTAAAGCCTCGAGTTTTGACAATTGTAGAGGAAGAAGCTGATTTGATAAGCTCAAAAAATGATTTTCTTAAGTGCTTTGAAGAGTGCCTTAGATTCTACACTCTCTACTTTGAGATGTTGGAAGAGAGCTTTGTGGCAACAAGCAATGAGAGATTGGCTTTGGAAAGAGAGTGTTCAAGAAGCATTGTGAGGCTTTTGGGGTGTGATGATAATAATGAAAGTGAAGGAGAAATAATGGGGAGTGAGAGAAGAGAAAGAGGAAAGCAATGGAGCAAAAGGCTCAAAGAAGCAGCCTTTTCATCACCTGGATTTAGTGAAGATGTGATGGATGATGTTAAGGCTTTGCTCAAGAGGTACAAACCCGGTTGGGCGGTTCTGCGTCGGCCGGCCGCCACCACCACCGCCACCGGATCCGAAGAAGAAGATGGTGATGATTCAAGTGGAATTTACTTGACATGGAAGGAAGAACCAGTGGTGTGGGTTTCAGCATGGAAACCCTAG 1380 47.39 MDITFFTAKEAPTSFFSQSHDHHHHHHLRHLPFSNLDMQSSTSQSSEYSPEHSPSTAAATAAAGKWASTLLKECAKAISEKDSNKIHHFLWMLNELASPYGDSDQKLASYFLQALFCRATETGLNCYKTLVAVAEKNHSFDSARRLILKFQEASPWTTFGHVASNGAILEALEGESKLHIIDISNTLCTQWPTLLESLATRNDDTPHLKLTVVTTTTIVKSLMKEIGQRMEKFARLMGVPFEFNPITNLNQLTDLTNEALKVEEDEAIAINCIGALRRVRVEERNNVISMLKSLKPRVLTIVEEEADLISSKNDFLKCFEECLRFYTLYFEMLEESFVATSNERLALERECSRSIVRLLGCDDNNESEGEIMGSERRERGKQWSKRLKEAAFSSPGFSEDVMDDVKALLKRYKPGWAVLRRPAATTTATGSEEEDGDDSSGIYLTWKEEPVVWVSAWKP 459
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 60769915 60771786 - Hsped.03g10770.1 Hepe03g1077 566075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1077 459 ProSiteProfiles GRAS family profile. 58 458 IPR005202 -
Hepe03g1077 459 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 51 457 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Hepe03g1077 459 Pfam GRAS domain family 69 458 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0199 Hepe-Chr2:2036986 Hepe03g1077 Hepe-Chr3:60769915 5.75e-53 dispersed
Hepe03g1077 Hepe-Chr3:60769915 Hepe04g1315 Hepe-Chr4:68769049 3.00e-144 dispersed
Hepe03g1077 Hepe-Chr3:60769915 Hepe06g0540 Hepe-Chr6:30762455 3.12e-42 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55262 PF03514 GRAS 4.00E-94 CL0063 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1077 K27743 - csv:101206730 761.911