Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1107 ATGAACTGGTTCATTAATGGTGGAGTTATGGAAACTAAGGCTGGTTTGCTTGGTGGGGGTGGGAAGATATGGCTTCTCCAATTGTGGGAGAATGTCATTGGGAACTGTTGCAAGATGCATAACCAGTACTACCAGTATATTGGATCCAAGGAAGTTAGAAAAACTTGGTGGAGAAGGATTTTGGTGGCCTGGGTTCTTGGCTCAACTCTTGCTTCTTTATGGATCTTCCATTACATGACCTCACAAGCTACTGAGAAGAGAAAAGAGGCCTTAGGAAGCATGTGTGATGAGAGGGCTAGGATGCTTCAAGACCAGTTTAATGTCAGCATGAATCATATCCAAGCAATGTCCATCCTCATCTCCACCTTCCATCATGGCAAGAATCCATCTGCTATAGATCAGAGGACCTTTGCGAGGTACACGGAAAGAACTGCTTTTGAGAGGCCTCTTACCAGTGGTGTGGCGTACGCGGTAAGGGTGCTCGATTCTGAAAGAGAACATTTTGAGAAGCAACAGGGCTGGACAATTAAAAGGATGGACAAAATCGAACAAAGTCCGGTTCACGAAGATGACTATGCTCCAGAAGACCTGGAGCCATCGCCCACCCAAGACGAATATGCTCCTGTAATCTTCGCACAGGATACAATTTCTCATGTCGTTTCTCTCGATATGCTGTCGGGAGTGGAAGACCGTAAGAATGTATTACGTGCTAGAGCATCGGGAAAGGGAGTCTTAACTGCTCCATTCAAGTTAATCAAAACGAATCGTCTAGGAGTCATACTTACATTTGCTGTCTACAAGAGAGATCTTCCCTCAAATGCCACTCCAAATGAGAGGATTCAAGCTACAGATGGGTATCTTGGCGGAGTTTTTGATATCGAGTCACTTGTGGAGAAGTTACTTCAACAGCTTGCAAGCAACCGAACCATCCTAGTGAATGTTTATGATACCACTAATCAATCACACCCGATCAGTATGTACGGTAAAGACATATCAAAAGATGGGTTGCAGCATGTTAGCCCCCTTAACTTTGGGGATCCAGATAGAAAGCATGAGATGCGATGCAGATTCAAACAAAAACAACCTTGGCCATGGTTAGCAATGACAACTTCAATTGGCGTACTTATTATTGCATTGCTTTTGGGGTATATATTCCACGCAACCTTGAACCGAATCGCCAAAGTGGAGGATGATTATCATAAGATGATGGAACTCAAGAAACGGGCGGAAGATGCTGATGTTGCCAAATCCCAGTTCCTTGCAACGGTCTCCCATGAGATCAGAACCCCAATGAATGGTGTTCTAGGAATGTTGCATTTGCTTATGGACACAGACTTAGATGTGACTCAACAAGATTTTGTTAAAACTGCACAAGATAGTGGGAAAGCTTTGGTATCACTCATAAATGAGGTTTTGGATCAGGCAAAAATTGAATCTGGAAAGCTTGAGCTTGAAGCAATACCATTCAATCCACGAGCGATTTTGGATGATATCTTATCGCTCTTCTCTGGGAAATCTCAAGAAAAAGGACTGGAGTTGGCAGTTTATATCTCAGATAGTGTTCCTGAGATGCTTATTGGTGATCCTGGAAGGTTTAGGCAAATCATCACTAATCTCATGGGAAACTCAATCAAGTTCACAGAGAGAGGGCACATATTGGTCACTGTTAATCTCGTCGAGGAGGTTATGGAATCAATTGATCTTGAGATCGAGTCGTCAACAAATAGCACATTGAGTGGCTATCCTATTGCCAATAGACGCCTAAGCTGGACGGGATTTCGAACGTTCAGTCAAGAGGGATCCACTGCTTGTCATTTCCTGCCATCTCCATCAGACCTTATTAATCTCATGGTATCCGTGGAAGATACGGGCGTTGGTATTCCTCTAGAAGACCAGTCACGTGTTTTCACTCCCTTCATGCAGGTTCGACCATCTATCTCTAGAACCCATGGGGGAACGGGTATCGGGCTGAGTATTAGCAAATGTTTGGTTGGCCTCATGAAGGGGGAGATCGGTTTTGTGAGTGCACCGAAGATTGGTTCTACCTTCACATTTACGGCTGTTTTCACAAATGGCTCTTTCAATTCAAGTGAGTATAACAAAACCCAACAAATTAAGAACACTTCCATCCCAGCATCCTCAGAATTTAAGGGTATGAGAGCTTTAGTTGTGGACCATCGACCTATTCGAGCCAAAGTATCAAGATATCATATTCGACGTCTTGGAATAAATGTCGAATTATTATCTGACTTGAACCAATGTCTATCTACCACGAGTATTAGTGGTTCGACTATCAATATGATTTTTGTCGAGCAAGATCTTTGGGATCAGGATACGAGCACATCGGAACTCTTTATCAAGAACTTGAGAAACTCTTATGGGGTTCCTCCCAAACTGTTTCTTCTTACTAGCTGCATTAGTTCTTCAAAATCTAGCACTTTAATTTCTGATGTGCTCACTCCCACAGTCATCTTAAAGCCCTTGAGGGCAGGCATGCTCGCTGCTTCTCTACACCGAGTCATGGGTGTAGGGATCAAGGGTAATCTTCGAAATGGAGAGCTTCCTGTACTCTCTCTTCGTAATTTACTTCTTGGTCGGAAAATTCTTGTAATAGATGACAATAAGGTGAACCGGATTGTCGCTGCTGGTGCTCTAAGGCGGTATGGAGCTGATGTGGTATGTGAAAACAGTGGAAGAGATGCGATCCGACTGCTTACACCACCCCATCATTTCGATGCATGTTTCATGGATATTCAGATGCCAGAAATGGATGGCTTTGAAGCAACAAAAAGAATTCGGGAAATCGAACATCATATCAATGACAGTATTCAACTTGGAGAACTACCAAAAGAAGCGTTCGACAATAATTGTTATTGGCATGTACCCATCTTGGCCATGACCGCAGACGTAATCCAGGCTACACATGAGGAATGCCTTCGGTGTGGGATGGATGGATACGTTTCAAAGCCATTTGAAGTTGAACGACTTTACCGAGAAGTTTCTCAATTTTTCCACAGCACCCCAAATGGAACTTTATAG 3039 43.4 MNWFINGGVMETKAGLLGGGGKIWLLQLWENVIGNCCKMHNQYYQYIGSKEVRKTWWRRILVAWVLGSTLASLWIFHYMTSQATEKRKEALGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLDSEREHFEKQQGWTIKRMDKIEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTISHVVSLDMLSGVEDRKNVLRARASGKGVLTAPFKLIKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASNRTILVNVYDTTNQSHPISMYGKDISKDGLQHVSPLNFGDPDRKHEMRCRFKQKQPWPWLAMTTSIGVLIIALLLGYIFHATLNRIAKVEDDYHKMMELKKRAEDADVAKSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDFVKTAQDSGKALVSLINEVLDQAKIESGKLELEAIPFNPRAILDDILSLFSGKSQEKGLELAVYISDSVPEMLIGDPGRFRQIITNLMGNSIKFTERGHILVTVNLVEEVMESIDLEIESSTNSTLSGYPIANRRLSWTGFRTFSQEGSTACHFLPSPSDLINLMVSVEDTGVGIPLEDQSRVFTPFMQVRPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSAPKIGSTFTFTAVFTNGSFNSSEYNKTQQIKNTSIPASSEFKGMRALVVDHRPIRAKVSRYHIRRLGINVELLSDLNQCLSTTSISGSTINMIFVEQDLWDQDTSTSELFIKNLRNSYGVPPKLFLLTSCISSSKSSTLISDVLTPTVILKPLRAGMLAASLHRVMGVGIKGNLRNGELPVLSLRNLLLGRKILVIDDNKVNRIVAAGALRRYGADVVCENSGRDAIRLLTPPHHFDACFMDIQMPEMDGFEATKRIREIEHHINDSIQLGELPKEAFDNNCYWHVPILAMTADVIQATHEECLRCGMDGYVSKPFEVERLYREVSQFFHSTPNGTL 1012
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 63614763 63622107 + Hsped.03g11070.1 Hepe03g1107 566105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1107 1012 Pfam His Kinase A (phospho-acceptor) domain 415 480 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe03g1107 1012 Gene3D - 866 1008 - -
Hepe03g1107 1012 SMART HKATPase_4 527 691 IPR003594 -
Hepe03g1107 1012 ProSiteProfiles Histidine kinase domain profile. 422 691 IPR005467 -
Hepe03g1107 1012 PRINTS Bacterial sensor protein C-terminal signature 634 644 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe03g1107 1012 PRINTS Bacterial sensor protein C-terminal signature 616 630 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe03g1107 1012 PRINTS Bacterial sensor protein C-terminal signature 675 688 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe03g1107 1012 PRINTS Bacterial sensor protein C-terminal signature 651 669 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe03g1107 1012 CDD REC_hyHK_CKI1_RcsC-like 868 1000 - -
Hepe03g1107 1012 ProSiteProfiles Response regulatory domain profile. 720 841 IPR001789 GO:0000160(InterPro)
Hepe03g1107 1012 CDD PRTases_typeI 814 893 IPR000836 -
Hepe03g1107 1012 ProSiteProfiles CHASE domain profile. 128 354 IPR006189 -
Hepe03g1107 1012 ProSiteProfiles Response regulatory domain profile. 867 1004 IPR001789 GO:0000160(InterPro)
Hepe03g1107 1012 FunFam Histidine kinase 4 387 478 - -
Hepe03g1107 1012 Gene3D - 79 131 - -
Hepe03g1107 1012 CDD HisKA 415 476 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe03g1107 1012 SUPERFAMILY CheY-like 715 842 IPR011006 -
Hepe03g1107 1012 SUPERFAMILY CheY-like 865 1003 IPR011006 -
Hepe03g1107 1012 Coils Coil 392 412 - -
Hepe03g1107 1012 Pfam Response regulator receiver domain 868 939 IPR001789 GO:0000160(InterPro)
Hepe03g1107 1012 CDD HATPase_EvgS-ArcB-TorS-like 532 689 - -
Hepe03g1107 1012 Pfam CHASE domain 131 327 IPR006189 -
Hepe03g1107 1012 SMART HisKA_10 415 480 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe03g1107 1012 PANTHER TWO-COMPONENT HISTIDINE KINASE 54 1003 IPR050956 -
Hepe03g1107 1012 Gene3D - 479 692 IPR036890 -
Hepe03g1107 1012 FunFam Histidine kinase 4 132 361 - -
Hepe03g1107 1012 Gene3D - 384 478 - -
Hepe03g1107 1012 Gene3D CHASE domain 132 361 IPR042240 -
Hepe03g1107 1012 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 402 481 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe03g1107 1012 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 469 686 IPR036890 -
Hepe03g1107 1012 SMART CHASE_2 128 329 IPR006189 -
Hepe03g1107 1012 SMART REC_2 866 1000 IPR001789 GO:0000160(InterPro)
Hepe03g1107 1012 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 615 687 IPR003594 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1937 Hepe-Chr1:84207514 Hepe03g1107 Hepe-Chr3:63614763 9.31e-41 dispersed
Hepe02g0293 Hepe-Chr2:2836260 Hepe03g1107 Hepe-Chr3:63614763 0.0 dispersed
Hepe03g1107 Hepe-Chr3:63614763 Hepe08g0395 Hepe-Chr8:3532040 0.0 dispersed
Hepe01g0254 Hepe-Chr1:38899143 Hepe03g1107 Hepe-Chr3:63614763 0.0 transposed
Hepe02g2600 Hepe-Chr2:73208730 Hepe03g1107 Hepe-Chr3:63614763 0.0 transposed
Hepe03g1107 Hepe-Chr3:63614763 Hepe08g1951 Hepe-Chr8:52953813 2.03e-06 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55264 PF03924 CHASE 1.20E-36 CL0165 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1107 K14489 - csv:101216313 1854.72