Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1109 ATGATGAACGCCGGGTATGATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCAGAGGTGCTCTTTATTTTGCAGAATCATGAGAAATATCAGCTGACTGAGGAGGCCCCAAAACAGCCAACTAGTGGATCTTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAGCTGGAGGAAAAAAAGGGACGGAAGAACTGTTGGAGAAGCACACGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACTATCCCAATTTCCAGAGACGTAGCTATTGGATGCTTGATCAGTCATGTGACCACATTGTTCTTGTACACTACAGAGATATTAGTGAGGGAAGGTCTGGGATGGAAAGTGTTCCACAATTATCTCCTGCATCGGCTTCTACTTCCAGTTCCTATTCGCCTCAAAATCTTGCTTCGGAACATCAACAGACTTCATTGAGCCCAGGGTCTGTAGAAGTTAGTTCTGACACTGGAAACTGTACTATTGGGTCAAATGGCGTTGATGGGCAGTATGAAATATCAGAATTAAAAAGTTCAAACAAATGTGAGGTTTCTCAAGCCTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGATATTGGTCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGAGGATCAGTTTCCAGTGCTTCATCATTCAGAAAATGCTGTCCATGATAATAATGATACATCGTTTGAGATGCAAGATGCTAATGGAAAACATCACCATTACGATACGGCACACGAGTTTATATTTGATGGTGAAGGAACTCAACCATGGGGTGATGCACTTGGTTCAAGTAAGACAACAGTTCTTGAGTCTCAAGATACACATTCTCTCCTATGGAATGAAAATGGAAAGCCATCATCATCTTCGAGTAGAAGTACAACTGTAGATAATGAACATTGCAACTGGCTACACAGCGGAGGAAAAACTTTTCCTTTGCTAGGAAGCACATCTTCAGAATATTCTTCACCACTAGACACTCATGATGTTAATTCCATCTACCACATACCATTTCTTAAACAAGACCATGGAAATTCTTTTGAAGTTGATACCCGTTTAATTGTTGCACAAGTGCAGAAATTTACAATCCACCAAATAGTACCTGAGCAAGGTTATGCCACTGAGAGTTCCAAGGTCATCATTATTGGATCCTTTATTTGTGATCCTTCAGAATCTCCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAATGGGGTACTTTGTTGCGAAGCACCTCCACACCTTCCTGGGAAGGTCGCTTTCTGCATTACATCGGGCAATCGAGAATCCTGCAGTGAAGTCAGAGAGTTCGAATATAAAATGAATGTTTGCAGTCATTGCCAATCACATTCAAGTGGAGCTACGAAGAGTTCAGAGGAGCTTTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGATTCATCAATGCAGAAATCTGACAAGGTAGATTCTGAAGTTAGGAGCAATAATTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGGTCTTCTAGTTGGTAGTGAAACTCCTTCTGGTACCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCATCTCTGGCTTTCTTCCCAACGGAAAGATGGACACGATCCGGCCGGCTGTTCCTTGTCCAAGAAAGAACAGGGCATTATACACATGATTGCCGGCTTAGGCTATGTGTGGGCATTAAACCCGATTCTCAGTTGTGGAGTGAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGCTTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGAAGCATCAGCTGGCGCTGTCACTGATCCCACTTCACAAGATCCAGTTGGTAAAACTGCAGCGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAGGTGAGCTTTCCAAAAGCTCTGCTGAGGTAGAAGCAGAAATGACAGTAAATTGCATTTCAAATGGGAACCTCTCTTCCACTGAGGACTATATCCCTCTAAAAAATACATTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCGGCCCGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGACAGCATAAAGAAGCAGCTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTGGCTATGTCGAAGTTGAACTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTGTCTATACAAAAAAAATATAGAGGTTGGAAAGGTCGTAGAGAGTTCTTATCACTTCGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTTGGCTTGAGAGGTTTTCGTAGCGAGATAGGGTCCATTGATGAAAATGAAGATGACGATATTATAAAGGTCTTCCGCAAACAAAAAGTGGAAGGGACTATCGACGAGGCCGTTTCACGAGTGCTATCCATGGTTGACTCTCCGGATGCTCGTCAGCAATATGATCGCATGCTTGAAGGATATCGGGAAGCTAAGGCTGAACTCAATGGTGCCGCTAGTGAATCCGCAGCATCGACTTCTCTTGGTGACATTTCTGGAATGGAAGATTGTAATCAATATCCTAAGTTTGTATAG 2898 42.13 MMNAGYDINDLYREAQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHYPNFQRRSYWMLDQSCDHIVLVHYRDISEGRSGMESVPQLSPASASTSSSYSPQNLASEHQQTSLSPGSVEVSSDTGNCTIGSNGVDGQYEISELKSSNKCEVSQALRRIEEQLSLNEDSLKDIGPFYGHEEGSNSNLIDYYEMSNEDQFPVLHHSENAVHDNNDTSFEMQDANGKHHHYDTAHEFIFDGEGTQPWGDALGSSKTTVLESQDTHSLLWNENGKPSSSSSRSTTVDNEHCNWLHSGGKTFPLLGSTSSEYSSPLDTHDVNSIYHIPFLKQDHGNSFEVDTRLIVAQVQKFTIHQIVPEQGYATESSKVIIIGSFICDPSESPWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVAFCITSGNRESCSEVREFEYKMNVCSHCQSHSSGATKSSEELLLLVRLVQLLLSDSSMQKSDKVDSEVRSNNLKAGDDQWSSLIEGLLVGSETPSGTIDWLLQELLKDKLHLWLSSQRKDGHDPAGCSLSKKEQGIIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVAALIASEASAGAVTDPTSQDPVGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEEGELSKSSAEVEAEMTVNCISNGNLSSTEDYIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQHKEAAFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRREFLSLRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEIGSIDENEDDDIIKVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYDRMLEGYREAKAELNGAASESAASTSLGDISGMEDCNQYPKFV 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 63630930 63679889 - Hsped.03g11090.1 Hepe03g1109 566107

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1109 965 ProSiteProfiles IQ motif profile. 747 775 - -
Hepe03g1109 965 Pfam IQ calmodulin-binding motif 806 824 IPR000048 GO:0005515(InterPro)
Hepe03g1109 965 Pfam IQ calmodulin-binding motif 829 848 IPR000048 GO:0005515(InterPro)
Hepe03g1109 965 SMART iq_5 746 768 IPR000048 GO:0005515(InterPro)
Hepe03g1109 965 SMART iq_5 826 848 IPR000048 GO:0005515(InterPro)
Hepe03g1109 965 SMART iq_5 803 825 IPR000048 GO:0005515(InterPro)
Hepe03g1109 965 Gene3D - 510 694 IPR036770 -
Hepe03g1109 965 ProSiteProfiles Ankyrin repeat region circular profile. 629 655 - -
Hepe03g1109 965 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 749 855 IPR027417 -
Hepe03g1109 965 SUPERFAMILY Ankyrin repeat 598 690 IPR036770 -
Hepe03g1109 965 ProSiteProfiles IQ motif profile. 827 851 - -
Hepe03g1109 965 ProSiteProfiles Ankyrin repeat profile. 629 661 IPR002110 GO:0005515(InterPro)
Hepe03g1109 965 MobiDBLite consensus disorder prediction 133 181 - -
Hepe03g1109 965 Pfam IPT/TIG domain 401 477 IPR002909 -
Hepe03g1109 965 SMART ANK_2a 629 658 IPR002110 GO:0005515(InterPro)
Hepe03g1109 965 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677(InterPro)
Hepe03g1109 965 Pfam CG-1 domain 14 127 IPR005559 GO:0003677(InterPro)
Hepe03g1109 965 Pfam Ankyrin repeats (3 copies) 602 688 IPR002110 GO:0005515(InterPro)
Hepe03g1109 965 ProSiteProfiles IQ motif profile. 804 833 - -
Hepe03g1109 965 MobiDBLite consensus disorder prediction 316 335 - -
Hepe03g1109 965 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 6 933 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Hepe03g1109 965 SMART CG_1_2 11 129 IPR005559 GO:0003677(InterPro)
Hepe03g1109 965 MobiDBLite consensus disorder prediction 135 181 - -
Hepe03g1109 965 SUPERFAMILY E set domains 401 484 IPR014756 -
Hepe03g1109 965 CDD IPT 401 485 - -
Hepe03g1109 965 FunFam Calmodulin-binding transcription activator 2 803 851 - -
Hepe03g1109 965 Gene3D - 804 851 - -
Hepe03g1109 965 Gene3D Immunoglobulins 395 488 IPR013783 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1109 K21596 - - csv:101222798 1647.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1109 Hepe-Chr3:63630930 Hepe07g0616 Hepe-Chr7:6791484 2.18e-156 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1270 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00202 Cam06g0008 Cec06g0221 Cco06g0217 Clacu06g0217 Cmu06g0212 Cre06g0984 . . . . . . Chy11g01789 Cme11g02321 . Blo12g00279 . . . . . . Sed09g0385 . . . . . . Cpe17g01072 . Bhi12g02457 Tan06g1519 Cmetu11g2536 . Hepe03g1109 . . . . . . . . . Lsi09g01722 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe03g1109 . 6 936 CAMTA Transcription Factor Family AT1G67310 52.1 6.1e-254 874.4
Hepe03g0056 . 34 620 CAMTA Transcription Factor Family AT3G16940 53.0 3.5e-167 585.9
Hepe03g0056 . 11 620 CAMTA Transcription Factor Family AT4G16150 53.1 4.3e-190 662.1
Hepe03g1109 . 6 936 CAMTA Transcription Factor Family AT1G67310 52.1 6.1e-254 874.4
Hepe03g0056 . 11 620 CAMTA Transcription Factor Family AT4G16150 53.1 4.3e-190 662.1
Hepe03g0056 . 34 620 CAMTA Transcription Factor Family AT3G16940 53.0 3.5e-167 585.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55265 PF03859 CG-1 1.90E-47 No_clan Hepe TF