Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1109 ATGATGAACGCCGGGTATGATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCAGAGGTGCTCTTTATTTTGCAGAATCATGAGAAATATCAGCTGACTGAGGAGGCCCCAAAACAGCCAACTAGTGGATCTTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAGAGATGGTCATAGCTGGAGGAAAAAAAGGGACGGAAGAACTGTTGGAGAAGCACACGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACTATCCCAATTTCCAGAGACGTAGCTATTGGATGCTTGATCAGTCATGTGACCACATTGTTCTTGTACACTACAGAGATATTAGTGAGGGAAGGTCTGGGATGGAAAGTGTTCCACAATTATCTCCTGCATCGGCTTCTACTTCCAGTTCCTATTCGCCTCAAAATCTTGCTTCGGAACATCAACAGACTTCATTGAGCCCAGGGTCTGTAGAAGTTAGTTCTGACACTGGAAACTGTACTATTGGGTCAAATGGCGTTGATGGGCAGTATGAAATATCAGAATTAAAAAGTTCAAACAAATGTGAGGTTTCTCAAGCCTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGATATTGGTCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGAGGATCAGTTTCCAGTGCTTCATCATTCAGAAAATGCTGTCCATGATAATAATGATACATCGTTTGAGATGCAAGATGCTAATGGAAAACATCACCATTACGATACGGCACACGAGTTTATATTTGATGGTGAAGGAACTCAACCATGGGGTGATGCACTTGGTTCAAGTAAGACAACAGTTCTTGAGTCTCAAGATACACATTCTCTCCTATGGAATGAAAATGGAAAGCCATCATCATCTTCGAGTAGAAGTACAACTGTAGATAATGAACATTGCAACTGGCTACACAGCGGAGGAAAAACTTTTCCTTTGCTAGGAAGCACATCTTCAGAATATTCTTCACCACTAGACACTCATGATGTTAATTCCATCTACCACATACCATTTCTTAAACAAGACCATGGAAATTCTTTTGAAGTTGATACCCGTTTAATTGTTGCACAAGTGCAGAAATTTACAATCCACCAAATAGTACCTGAGCAAGGTTATGCCACTGAGAGTTCCAAGGTCATCATTATTGGATCCTTTATTTGTGATCCTTCAGAATCTCCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAATGGGGTACTTTGTTGCGAAGCACCTCCACACCTTCCTGGGAAGGTCGCTTTCTGCATTACATCGGGCAATCGAGAATCCTGCAGTGAAGTCAGAGAGTTCGAATATAAAATGAATGTTTGCAGTCATTGCCAATCACATTCAAGTGGAGCTACGAAGAGTTCAGAGGAGCTTTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGATTCATCAATGCAGAAATCTGACAAGGTAGATTCTGAAGTTAGGAGCAATAATTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGGTCTTCTAGTTGGTAGTGAAACTCCTTCTGGTACCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCATCTCTGGCTTTCTTCCCAACGGAAAGATGGACACGATCCGGCCGGCTGTTCCTTGTCCAAGAAAGAACAGGGCATTATACACATGATTGCCGGCTTAGGCTATGTGTGGGCATTAAACCCGATTCTCAGTTGTGGAGTGAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGCTTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGAAGCATCAGCTGGCGCTGTCACTGATCCCACTTCACAAGATCCAGTTGGTAAAACTGCAGCGTCTATTGCAGACATCCATGGACACAAGGGACTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAGGTGAGCTTTCCAAAAGCTCTGCTGAGGTAGAAGCAGAAATGACAGTAAATTGCATTTCAAATGGGAACCTCTCTTCCACTGAGGACTATATCCCTCTAAAAAATACATTAGCTGCAGTCAGGAATGCTGCTCAGGCAGCGGCCCGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGACAGCATAAAGAAGCAGCTTTTGCAGCTTGTATAGATGAGTATGGAATTGATCCAAATGACATACAGGGGCTCTTGGCTATGTCGAAGTTGAACTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTGTCTATACAAAAAAAATATAGAGGTTGGAAAGGTCGTAGAGAGTTCTTATCACTTCGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGGTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTTGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTTGGCTTGAGAGGTTTTCGTAGCGAGATAGGGTCCATTGATGAAAATGAAGATGACGATATTATAAAGGTCTTCCGCAAACAAAAAGTGGAAGGGACTATCGACGAGGCCGTTTCACGAGTGCTATCCATGGTTGACTCTCCGGATGCTCGTCAGCAATATGATCGCATGCTTGAAGGATATCGGGAAGCTAAGGCTGAACTCAATGGTGCCGCTAGTGAATCCGCAGCATCGACTTCTCTTGGTGACATTTCTGGAATGGAAGATTGTAATCAATATCCTAAGTTTGTATAG 2898 42.13 MMNAGYDINDLYREAQTRWLKPPEVLFILQNHEKYQLTEEAPKQPTSGSLFLFNKRVLRFFRRDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHYPNFQRRSYWMLDQSCDHIVLVHYRDISEGRSGMESVPQLSPASASTSSSYSPQNLASEHQQTSLSPGSVEVSSDTGNCTIGSNGVDGQYEISELKSSNKCEVSQALRRIEEQLSLNEDSLKDIGPFYGHEEGSNSNLIDYYEMSNEDQFPVLHHSENAVHDNNDTSFEMQDANGKHHHYDTAHEFIFDGEGTQPWGDALGSSKTTVLESQDTHSLLWNENGKPSSSSSRSTTVDNEHCNWLHSGGKTFPLLGSTSSEYSSPLDTHDVNSIYHIPFLKQDHGNSFEVDTRLIVAQVQKFTIHQIVPEQGYATESSKVIIIGSFICDPSESPWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVAFCITSGNRESCSEVREFEYKMNVCSHCQSHSSGATKSSEELLLLVRLVQLLLSDSSMQKSDKVDSEVRSNNLKAGDDQWSSLIEGLLVGSETPSGTIDWLLQELLKDKLHLWLSSQRKDGHDPAGCSLSKKEQGIIHMIAGLGYVWALNPILSCGVNINFRDINGWTALHWAARFGREKMVAALIASEASAGAVTDPTSQDPVGKTAASIADIHGHKGLAGYLSEVALTSHLSSLTFEEGELSKSSAEVEAEMTVNCISNGNLSSTEDYIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQHKEAAFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRREFLSLRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEIGSIDENEDDDIIKVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYDRMLEGYREAKAELNGAASESAASTSLGDISGMEDCNQYPKFV 965
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 63630930 63679889 - Hsped.03g11090.1 Hepe03g1109 566107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1109 965 ProSiteProfiles IQ motif profile. 747 775 - -
Hepe03g1109 965 Pfam IQ calmodulin-binding motif 806 824 IPR000048 GO:0005515(InterPro)
Hepe03g1109 965 Pfam IQ calmodulin-binding motif 829 848 IPR000048 GO:0005515(InterPro)
Hepe03g1109 965 SMART iq_5 746 768 IPR000048 GO:0005515(InterPro)
Hepe03g1109 965 SMART iq_5 826 848 IPR000048 GO:0005515(InterPro)
Hepe03g1109 965 SMART iq_5 803 825 IPR000048 GO:0005515(InterPro)
Hepe03g1109 965 Gene3D - 510 694 IPR036770 -
Hepe03g1109 965 ProSiteProfiles Ankyrin repeat region circular profile. 629 655 - -
Hepe03g1109 965 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 749 855 IPR027417 -
Hepe03g1109 965 SUPERFAMILY Ankyrin repeat 598 690 IPR036770 -
Hepe03g1109 965 ProSiteProfiles IQ motif profile. 827 851 - -
Hepe03g1109 965 ProSiteProfiles Ankyrin repeat profile. 629 661 IPR002110 GO:0005515(InterPro)
Hepe03g1109 965 MobiDBLite consensus disorder prediction 133 181 - -
Hepe03g1109 965 Pfam IPT/TIG domain 401 477 IPR002909 -
Hepe03g1109 965 SMART ANK_2a 629 658 IPR002110 GO:0005515(InterPro)
Hepe03g1109 965 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677(InterPro)
Hepe03g1109 965 Pfam CG-1 domain 14 127 IPR005559 GO:0003677(InterPro)
Hepe03g1109 965 Pfam Ankyrin repeats (3 copies) 602 688 IPR002110 GO:0005515(InterPro)
Hepe03g1109 965 ProSiteProfiles IQ motif profile. 804 833 - -
Hepe03g1109 965 MobiDBLite consensus disorder prediction 316 335 - -
Hepe03g1109 965 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 6 933 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Hepe03g1109 965 SMART CG_1_2 11 129 IPR005559 GO:0003677(InterPro)
Hepe03g1109 965 MobiDBLite consensus disorder prediction 135 181 - -
Hepe03g1109 965 SUPERFAMILY E set domains 401 484 IPR014756 -
Hepe03g1109 965 CDD IPT 401 485 - -
Hepe03g1109 965 FunFam Calmodulin-binding transcription activator 2 803 851 - -
Hepe03g1109 965 Gene3D - 804 851 - -
Hepe03g1109 965 Gene3D Immunoglobulins 395 488 IPR013783 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1109 Hepe-Chr3:63630930 Hepe07g0616 Hepe-Chr7:6791484 2.18e-156 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55265 PF03859 CG-1 1.90E-47 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1109 K21596 - csv:101222798 1647.1