Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1115 ATGGGAAGAGGGAGAGTTGAACTGAAGAGAATAGAGAACAAGATCAACAGGCAAGTGACCTTCGCAAAACGAAGAAATGGTCTTTTGAAGAAAGCTTATGAACTTTCTGTTCTTTGCGATGCTGAAGTTGCCCTCATCATCTTCTCCAATAGAGGAAAATTGTACGAGTTTTGCAGTAGTTCAAGCATGCTCAAAACACTTGAGAGATACCAGAAATGCAACTATGGAGCACCAGAGCCAAATGTCTCCACAAGAGAGGCCTTGGAACTGAGCAGCCAGCAGGAGTATTTGAAGCTTAAAGCTCGCTATGAAGCTCTGCAACGATCCCAAAGGAACCTTTTGGGAGAAGACCTTGGTCCATTGAGTAGCAAAGAACTTGAATCTCTTGAGAGGCAACTTGATATGTCACTCAAGCAGATCAGATCAACAAGGACTCAGTACATGTTAGATCAGCTCACTGATCTTCAACGTAAGGAGCATCTTCTTAACGAAGCAAACAAGACTCTGAAACAAAGGTTAGTAGAAGGGTATCAAGTAAATGCTCTCCAATTGAACCAAAGTGCTGATGATATGATGTATGGAAGACAACAAGCTCATCAGTCTCATGGTGATGCCTTCTTTCATCCTTTAGATTGTGAACCCACCTTACAAATTGGGTATCAGCCAGATTCCATAGCAGTGGTCAATGCTGGACCAAGCATGAATAATTTCCTTCCAGGATGGTTGCCTTGA 732 42.62 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPEPNVSTREALELSSQQEYLKLKARYEALQRSQRNLLGEDLGPLSSKELESLERQLDMSLKQIRSTRTQYMLDQLTDLQRKEHLLNEANKTLKQRLVEGYQVNALQLNQSADDMMYGRQQAHQSHGDAFFHPLDCEPTLQIGYQPDSIAVVNAGPSMNNFLPGWLP 243
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 64068623 64076182 - Hsped.03g11150.1 Hepe03g1115 566113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1115 243 FunFam MADS-box transcription factor 7 13 98 - -
Hepe03g1115 243 Pfam K-box region 91 173 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe03g1115 243 ProSiteProfiles K-box domain profile. 89 185 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Hepe03g1115 243 SUPERFAMILY SRF-like 2 76 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g1115 243 Coils Coil 126 146 - -
Hepe03g1115 243 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 194 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe03g1115 243 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g1115 243 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g1115 243 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g1115 243 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g1115 243 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g1115 243 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g1115 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g1115 243 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Hepe03g1115 243 Gene3D - 13 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Hepe03g1115 243 Coils Coil 152 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0917 Hepe-Chr2:11042682 Hepe03g1115 Hepe-Chr3:64068623 7.00e-96 dispersed
Hepe03g0477 Hepe-Chr3:7313329 Hepe03g1115 Hepe-Chr3:64068623 4.57e-72 dispersed
Hepe03g1115 Hepe-Chr3:64068623 Hepe07g2445 Hepe-Chr7:68790461 9.26e-79 dispersed
Hepe06g0418 Hepe-Chr6:15847729 Hepe03g1115 Hepe-Chr3:64068623 3.50e-08 dispersed
Hepe03g1114 Hepe-Chr3:63855417 Hepe03g1115 Hepe-Chr3:64068623 1.25e-26 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55267 PF01486 K-box 2.90E-26 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1115 - - - 0.0