Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1119 ATGTATTTGAAACTCAGGGGCATTGGTAATATGGGTGAAGGATCTATAGATGACATGAAAGGAACTCGAGTTACTTTGATCGAGTCGTCGGCTTCGAGATTAATGAAGAGGTCGCGTACCCCTGGAAGCGGAGCCCAAGTTCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGATTATCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTCGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCGCAGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCATTTGGTAATCAGTTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAACGATCAAACCCGAGAACAACACCCCTCTTTGCGGCAGCAACTCACAGTTCGACTTTGCAGACAGAAGAAGAAGTATGTTGCCCGGGTCGTTGCTGGCTTCTGATTACAAAGAAAAACAACTAGCAATCTCTTGCATCCCTATAGGACTGCTTCCCAAATCATCTGATACTCAGCCGTTTCTCAACGTTGGATCCAGCAACGGTGGGAATGTTCAGAAAGTGCTCGGAAATGGATCGAATCGGTTCTTCGACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGGTCCAACCCAACCTCATCCCCCCAGCCCATTTCATCCATAGCGACGGTCTTGGCTTGGAGAGTGACCCCATTAATTCTGGTTTGGTCTCGGACGGTAGCAGCGATGCCAACATCCGGTGCTACTCGACGTTCCAGGACGGACCTGATGGATCATCCATAGATTTATTCAGGTTTTGA 990 47.68 MYLKLRGIGNMGEGSIDDMKGTRVTLIESSASRLMKRSRTPGSGAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPQTMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGTIKPENNTPLCGSNSQFDFADRRRSMLPGSLLASDYKEKQLAISCIPIGLLPKSSDTQPFLNVGSSNGGNVQKVLGNGSNRFFDSDCALSLLSTPVEPGEINLSSMVQPNLIPPAHFIHSDGLGLESDPINSGLVSDGSSDANIRCYSTFQDGPDGSSIDLFRF 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 64225248 64228579 - Hsped.03g11190.1 Hepe03g1119 566117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1119 329 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe03g1119 329 Pfam SBP domain 50 123 IPR004333 GO:0003677(InterPro)
Hepe03g1119 329 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677(InterPro)
Hepe03g1119 329 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 31 298 IPR044817 GO:0003677(InterPro)
Hepe03g1119 329 Gene3D - 41 111 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe03g1119 329 FunFam Squamosa promoter-binding-like protein 14 42 111 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1119 Hepe-Chr3:64225248 Hepe07g2119 Hepe-Chr7:65507794 3.84e-56 dispersed
Hepe02g1698 Hepe-Chr2:23185707 Hepe03g1119 Hepe-Chr3:64225248 2.12e-47 wgd
Hepe03g1119 Hepe-Chr3:64225248 Hepe09g0038 Hepe-Chr9:324789 2.24e-57 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55268 PF03110 SBP 7.40E-29 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1119 - - - 0.0