Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1119 ATGTATTTGAAACTCAGGGGCATTGGTAATATGGGTGAAGGATCTATAGATGACATGAAAGGAACTCGAGTTACTTTGATCGAGTCGTCGGCTTCGAGATTAATGAAGAGGTCGCGTACCCCTGGAAGCGGAGCCCAAGTTCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGATTATCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTCGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCGCAGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCATTTGGTAATCAGTTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAACGATCAAACCCGAGAACAACACCCCTCTTTGCGGCAGCAACTCACAGTTCGACTTTGCAGACAGAAGAAGAAGTATGTTGCCCGGGTCGTTGCTGGCTTCTGATTACAAAGAAAAACAACTAGCAATCTCTTGCATCCCTATAGGACTGCTTCCCAAATCATCTGATACTCAGCCGTTTCTCAACGTTGGATCCAGCAACGGTGGGAATGTTCAGAAAGTGCTCGGAAATGGATCGAATCGGTTCTTCGACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGGTCCAACCCAACCTCATCCCCCCAGCCCATTTCATCCATAGCGACGGTCTTGGCTTGGAGAGTGACCCCATTAATTCTGGTTTGGTCTCGGACGGTAGCAGCGATGCCAACATCCGGTGCTACTCGACGTTCCAGGACGGACCTGATGGATCATCCATAGATTTATTCAGGTTTTGA 990 47.68 MYLKLRGIGNMGEGSIDDMKGTRVTLIESSASRLMKRSRTPGSGAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPQTMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGTIKPENNTPLCGSNSQFDFADRRRSMLPGSLLASDYKEKQLAISCIPIGLLPKSSDTQPFLNVGSSNGGNVQKVLGNGSNRFFDSDCALSLLSTPVEPGEINLSSMVQPNLIPPAHFIHSDGLGLESDPINSGLVSDGSSDANIRCYSTFQDGPDGSSIDLFRF 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 64225248 64228579 - Hsped.03g11190.1 Hepe03g1119 566117

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1119 329 SUPERFAMILY SBT domain 48 129 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe03g1119 329 Pfam SBP domain 50 123 IPR004333 GO:0003677(InterPro)
Hepe03g1119 329 ProSiteProfiles Zinc finger SBP-type profile. 47 124 IPR004333 GO:0003677(InterPro)
Hepe03g1119 329 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 31 298 IPR044817 GO:0003677(InterPro)
Hepe03g1119 329 Gene3D - 41 111 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe03g1119 329 FunFam Squamosa promoter-binding-like protein 14 42 111 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1119 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1119 Hepe-Chr3:64225248 Hepe07g2119 Hepe-Chr7:65507794 3.84e-56 dispersed
Hepe02g1698 Hepe-Chr2:23185707 Hepe03g1119 Hepe-Chr3:64225248 2.12e-47 wgd
Hepe03g1119 Hepe-Chr3:64225248 Hepe09g0038 Hepe-Chr9:324789 2.24e-57 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1273 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00193 Cam06g0016 Cec06g0214 Cco06g0208 Clacu06g0211 Cmu06g0204 Cre06g0977 . . . . . . Chy11g01795 Cme11g02326 . . . . . . . . Sed08g1495 . . . . . . Cpe17g01068 . Bhi12g02448 Tan06g1510 Cmetu11g0895 . Hepe03g1119 . . . . . . . . . Lsi09g01730 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g1180 . 180 1013 SBP-box Gene Family AT2G47070 55.7 3.3e-241 831.6
Hepe02g1180 . 25 1013 SBP-box Gene Family AT3G60030 54.9 9.0e-281 963.4
Hepe03g1119 . 15 163 SBP-box Gene Family AT5G50570 54.6 9.3e-40 161.4
Hepe02g1698 . 67 166 SBP-box Gene Family AT5G50570 67.0 7.3e-37 151.8
Hepe05g0545 . 5 177 SBP-box Gene Family AT3G57920 52.9 2.2e-38 156.8
Hepe07g2446 . 121 279 SBP-box Gene Family AT1G69170 53.5 3.2e-41 166.4
Hepe05g0545 . 10 176 SBP-box Gene Family AT2G42200 55.6 3.0e-41 166.4
Hepe02g1180 . 180 1013 SBP-box Gene Family AT2G47070 55.7 3.3e-241 831.6
Hepe07g2446 . 121 279 SBP-box Gene Family AT1G69170 53.5 3.2e-41 166.4
Hepe05g0545 . 10 176 SBP-box Gene Family AT2G42200 55.6 3.0e-41 166.4
Hepe02g1180 . 25 1013 SBP-box Gene Family AT3G60030 54.9 9.0e-281 963.4
Hepe03g1119 . 15 163 SBP-box Gene Family AT5G50570 54.6 9.3e-40 161.4
Hepe02g1698 . 67 166 SBP-box Gene Family AT5G50570 67.0 7.3e-37 151.8
Hepe03g1119 . 15 163 SBP-box Gene Family AT5G50670 54.6 9.3e-40 161.4
Hepe02g1698 . 67 166 SBP-box Gene Family AT5G50670 67.0 7.3e-37 151.8
Hepe05g0545 . 5 177 SBP-box Gene Family AT3G57920 52.9 2.2e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007281 0 3 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 2 1 1 1 1 1 5 1 2 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55268 PF03110 SBP 7.40E-29 No_clan Hepe TF