Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe03g1119 | ATGTATTTGAAACTCAGGGGCATTGGTAATATGGGTGAAGGATCTATAGATGACATGAAAGGAACTCGAGTTACTTTGATCGAGTCGTCGGCTTCGAGATTAATGAAGAGGTCGCGTACCCCTGGAAGCGGAGCCCAAGTTCCTTCGTGTATGGTTGATGGCTGCAGTTCAGACCTTAGCAAATGCAGGGATTATCATCGTCGCCATAAAGTATGCGAGCTCCATTCTAAAACACCGAAAGTAACCATTTGCGGTCAGGAACAACGATTCTGCCAGCAGTGTAGCAGATTCCATTCTTTGGTGGAGTTCGATGATCGAAAACGAAGCTGTAGGAAACGTCTTGATGGGCACAACCGACGTCGAAGAAAGCCTCAACCGCAGACTATGACACTAAATGCAGGAAGATTTCTCTATGGCAACCAAGGTCCAAGATTCTTACCATTTGGTAATCAGTTACTGTCTGCCAGCAATGATGTGAGCTCTTCTTGGATTGGAACGATCAAACCCGAGAACAACACCCCTCTTTGCGGCAGCAACTCACAGTTCGACTTTGCAGACAGAAGAAGAAGTATGTTGCCCGGGTCGTTGCTGGCTTCTGATTACAAAGAAAAACAACTAGCAATCTCTTGCATCCCTATAGGACTGCTTCCCAAATCATCTGATACTCAGCCGTTTCTCAACGTTGGATCCAGCAACGGTGGGAATGTTCAGAAAGTGCTCGGAAATGGATCGAATCGGTTCTTCGACTCTGACTGTGCTCTCTCTCTTCTGTCAACACCAGTTGAGCCTGGGGAGATTAATCTAAGCTCCATGGTCCAACCCAACCTCATCCCCCCAGCCCATTTCATCCATAGCGACGGTCTTGGCTTGGAGAGTGACCCCATTAATTCTGGTTTGGTCTCGGACGGTAGCAGCGATGCCAACATCCGGTGCTACTCGACGTTCCAGGACGGACCTGATGGATCATCCATAGATTTATTCAGGTTTTGA | 990 | 47.68 | MYLKLRGIGNMGEGSIDDMKGTRVTLIESSASRLMKRSRTPGSGAQVPSCMVDGCSSDLSKCRDYHRRHKVCELHSKTPKVTICGQEQRFCQQCSRFHSLVEFDDRKRSCRKRLDGHNRRRRKPQPQTMTLNAGRFLYGNQGPRFLPFGNQLLSASNDVSSSWIGTIKPENNTPLCGSNSQFDFADRRRSMLPGSLLASDYKEKQLAISCIPIGLLPKSSDTQPFLNVGSSNGGNVQKVLGNGSNRFFDSDCALSLLSTPVEPGEINLSSMVQPNLIPPAHFIHSDGLGLESDPINSGLVSDGSSDANIRCYSTFQDGPDGSSIDLFRF | 329 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 64225248 | 64228579 | - | Hsped.03g11190.1 | Hepe03g1119 | 566117 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe03g1119 | 329 | SUPERFAMILY | SBT domain | 48 | 129 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Hepe03g1119 | 329 | Pfam | SBP domain | 50 | 123 | IPR004333 | GO:0003677(InterPro) | |
Hepe03g1119 | 329 | ProSiteProfiles | Zinc finger SBP-type profile. | 47 | 124 | IPR004333 | GO:0003677(InterPro) | |
Hepe03g1119 | 329 | PANTHER | SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 | 31 | 298 | IPR044817 | GO:0003677(InterPro) | |
Hepe03g1119 | 329 | Gene3D | - | 41 | 111 | IPR036893 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Hepe03g1119 | 329 | FunFam | Squamosa promoter-binding-like protein 14 | 42 | 111 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe03g1119 | Hepe-Chr3:64225248 | Hepe07g2119 | Hepe-Chr7:65507794 | 3.84e-56 | dispersed | |
Hepe02g1698 | Hepe-Chr2:23185707 | Hepe03g1119 | Hepe-Chr3:64225248 | 2.12e-47 | wgd | |
Hepe03g1119 | Hepe-Chr3:64225248 | Hepe09g0038 | Hepe-Chr9:324789 | 2.24e-57 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55268 | PF03110 | SBP | 7.40E-29 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe03g1119 | - | - | - | 0.0 |