Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1140 ATGGCAGAGCACAACAACAACAAGAGGAAGCAGCCACCATCATCATCATCAACAACAACAACAATACCATTAACACCATCTCCACCATCATCAGATATCAAAGACTTCAGTATCATAATTTCAAACAAAGATGACAACAAGAAACAGCTTCAAATTCAACAACAATTGCCTCCTAAACGTACCTCCAACAAAGACCGTCACAAGAAAGTCGATGGCCGCGGTCGCCGGATCCGCATGCCCGCCCTCTGCGCCGCCCGTGTCTTCCAATTGACTCGCGAATTAGGCCACAAGACCGACGGAGAAACCATCCAGTGGCTCCTCCAGCAGGCTGAGCCTTCGATCATCGCCGCTACAGGTACCGGCACCATCCCTGCTTCCGCCCTACACGCCGCTGGGGTCTCCGTCTCCGACCACGACACCTCCGTCTCCGCTGCCCTAACCCCCAAAATCGACCCCAGGCCGAATTGGGCGATGATGGGAGCCAATCTGAACAGATCTCACATGGCCACAGCCGGATTCTGGCCGTCGCTTGGTGGAATCGGGACGGGGTTTGTCACCGAGAATTCCGGTTCGATTATGCCGAAATTCGGGTTCCATGGATTCGAATTTCAGGGGATGAATTTGGGATCGGTGAATTTCCCGACGATTATCGGGAATCAGCATCATCATCATCAGCAAGTGCCGGGGCTGGAGCTAGGGCTTTCACAGGACGGGAATAATAACAATCTGAGGGGGATGTTGAATCCGCCATCGTTTTCCCAAATTTATCACCAATTCGGGCAAAATCGGGATTCTTCCGCCGCGCCATTGGAGCAAGAACAAGCTCCTGATAAAGACGATTCTCAAGAATCGAGATGA 858 51.98 MAEHNNNKRKQPPSSSSTTTTIPLTPSPPSSDIKDFSIIISNKDDNKKQLQIQQQLPPKRTSNKDRHKKVDGRGRRIRMPALCAARVFQLTRELGHKTDGETIQWLLQQAEPSIIAATGTGTIPASALHAAGVSVSDHDTSVSAALTPKIDPRPNWAMMGANLNRSHMATAGFWPSLGGIGTGFVTENSGSIMPKFGFHGFEFQGMNLGSVNFPTIIGNQHHHHQQVPGLELGLSQDGNNNNLRGMLNPPSFSQIYHQFGQNRDSSAAPLEQEQAPDKDDSQESR 285
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 64607099 64609112 + Hsped.03g11400.1 Hepe03g1140 566138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1140 285 MobiDBLite consensus disorder prediction 7 59 - -
Hepe03g1140 285 ProSiteProfiles TCP domain profile. 63 117 IPR017887 -
Hepe03g1140 285 MobiDBLite consensus disorder prediction 232 269 - -
Hepe03g1140 285 MobiDBLite consensus disorder prediction 1 75 - -
Hepe03g1140 285 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 244 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Hepe03g1140 285 MobiDBLite consensus disorder prediction 230 285 - -
Hepe03g1140 285 Pfam TCP family transcription factor 61 149 IPR017887 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1140 Hepe-Chr3:64607099 Hepe09g0125 Hepe-Chr9:998999 1.25e-36 dispersed
Hepe02g1690 Hepe-Chr2:22930282 Hepe03g1140 Hepe-Chr3:64607099 1.05e-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55269 PF03634 TCP 8.10E-31 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1140 - - - 0.0