Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1142 ATGGCGGCTTCTTTTGCTACTACGCCTCTGACCAGAGCTTCAGGTCCGTGTAATTCGGTTAAGCTCCATAGGGTTCAATTGCCGTCGAAGCTTTCGTCGTCATCCAGTTTTCTCTCCGGTTCGTTGCATTTTCCTTCTCTGAGAACTTCCTTGAATCCGTTGTCTTCGAGGACTGCTGTTCGTAGCTCCGTCCGAGCTACTGCTGAGGTAGCAGCTCCACAAGCGAAAGTAACAAACAAGGTATATTTCGATGTGAGCATTGGTAATCCAGTAGGGAAGCTTGTTGGAAGGATTGTGATTGGATTATTTGGGGATGATGTGCCCAAAACGGCAGAGAACTTCCGTGCTCTTTGCACAGGAGAGAAGGGCTTTGGATTCAAAGGTTCTGCGTTTCATCGTGTAATCAGGGATTTCATGATACAAGGGGGTGACTTTGACAAGGGAAATGGAACTGGGGGTAAAAGCATATATGGTCGAACATTTAAAGATGAAAACTTCAAATTGATTCATACTGGACCAGGAGTTGTCAGCATGGCAAATGCAGGTCCAAACACTAATGGAAGTCAGTTTTTCATATGCACTGTCAAGACGCCGTGGCTGGATCAGAGGCATGTGGTTTTTGGGCAAGTCCTTGAAGGGTTCGATATTGTTAAGCTAATTGAGTCGCAGGAAACAGACCGCGGAGACCGGCCATTGAAGAAGGTCGTCATCAGTGACTGCGGCGAGCTTCCGGTGGCCTAA 741 47.37 MAASFATTPLTRASGPCNSVKLHRVQLPSKLSSSSSFLSGSLHFPSLRTSLNPLSSRTAVRSSVRATAEVAAPQAKVTNKVYFDVSIGNPVGKLVGRIVIGLFGDDVPKTAENFRALCTGEKGFGFKGSAFHRVIRDFMIQGGDFDKGNGTGGKSIYGRTFKDENFKLIHTGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGFDIVKLIESQETDRGDRPLKKVVISDCGELPVA 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 64658632 64665285 - Hsped.03g11420.1 Hepe03g1142 566140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1142 246 FunFam Peptidyl-prolyl cis-trans isomerase 67 246 - -
Hepe03g1142 246 SUPERFAMILY Cyclophilin-like 70 243 IPR029000 -
Hepe03g1142 246 CDD cyclophilin_ABH_like 80 241 - -
Hepe03g1142 246 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 202 217 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Hepe03g1142 246 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 174 189 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Hepe03g1142 246 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 102 117 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Hepe03g1142 246 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 143 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Hepe03g1142 246 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 189 201 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Hepe03g1142 246 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 92 242 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Hepe03g1142 246 Gene3D - 66 246 IPR029000 -
Hepe03g1142 246 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 126 143 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Hepe03g1142 246 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 78 243 - -
Hepe03g1142 246 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 95 241 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1142 K03768 - - csv:101218923 412.92
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2549 Hepe-Chr2:72423556 Hepe03g1142 Hepe-Chr3:64658632 6.60e-54 dispersed
Hepe03g1142 Hepe-Chr3:64658632 Hepe08g0727 Hepe-Chr8:6542293 1.29e-65 dispersed
Hepe03g1142 Hepe-Chr3:64658632 Hepe09g1485 Hepe-Chr9:35233318 1.40e-67 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1302 . . . . . . . Bma15g00278 . . . . . . . . . . . . . . . . Cla06g00178 Cam06g0033 Cec06g0197 Cco06g0192 Clacu06g0194 Cmu06g0188 Cre06g0960 . . . . Lsi04g00730 . Chy11g01811 Cme11g02344 Blo06g00788 Blo12g00285 . . . . . . Sed09g0360 . . . . . . . . Bhi12g02419 Tan06g1479 Cmetu11g1517 . Hepe03g1142 . . . . . . . . . Lsi09g01747 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009740 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33