Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1204 ATGGCCGGCTTGGTCACCGGTTCCCAACACAACCCTCATGCTGCCGACGAGAGTCTAAATGGACCTCGACCGTCGTCCAAAACATGTCGAGTTTGTGGCGACGAAATAGGAGTACATAAAGAAGACGGAAAAGTATTCGTGGCGTGTCTCGTGTGCAATTTCCCCGTTTGTCGTCCTTGTTACGAGTACGAAAGGAGTGAAGGCAATAAGTGTTGTCCTCAATGCAACACTCGCTACAAACGTCAGAAAGGCTCTCCAAGAATCATTGGCGATGATGAAGAAGCTGATGATGCAGATGATTTTGATGAAGAATTCCCCATTAAACATCACAATGATGACTTTGAAACAAAACAGACTAATCATTTGGAAAATGATGCTTCCAACTACAACCAGCAGAATTGGAAACAAAATGTTCAGACTTCCTTCTCAGTTGCAGGCAGTGTGAACGGCAAGGAATTTGAAGGCGAAAAGGAAGGTTATGGGAATGCAGAATGGAAGGAAAGAATCGATAAATGGAAAGTGAGGCAAGAGAAGAGAGGTTTGGGGAACAAACAAAATGAACCCGAAGAAGATGACTATCTATTGGCCGAAGCTCGGCAACCTCTATGGCGGAAAGTTCCAATTCCGTCGAGCAAAATCAGTCCATATCGCATAGTCATAGTCCTCCGCCTCGTAATTCTCGCTTTGTTCTTCCGTTTCCGGATCCTAACTCCGGCCTACGACGCCTACCCCTTGTGGCTCATCTCCGTTATCTGCGAAATCTGGTTCGGCATCTCTTGGATTCTCGATCAGTTCCCCAAATGGGCTCCGATCAACCGGGAGACGTATCTCGATCGTCTGTCCATGCGTTTCGAGCGGGAAGGGGAACCCAACCACCTGGCTCCGGTCGACTTCTTCGTCAGTACCGTGGACCCTCTGAAGGAGCCTCCGATCATCACGGCGAACACGGTGCTCTCCATCCTCGCTGTGGACTATCCGGTGGAGAAGGTCAGCTGCTACGTGTCCGACGACGGAGCGTCCATGCTGCTGTTCGACACGCTGGCGGAGACGGCAGAGTTTGCTCGGAGATGGGTGCCGTTCTGCAAGAAGTTCAGTGTGGAGCCTAGGACGCCGGAGTTTTACTTCTCGCAGAAGATGGATTACTTGAAGGATAAGGTGGTGGCGAGCTTTGTGAAGGAGAGGCGGGCGATGAAGAGGGAATATGAGGAATTCAAGGTGAGGATCAATGCGTTGGTGGCGAAGGCGCAGAAGAAACCAGAAGAGGGATGGGTTATGCAGGATGGAACTCCATGGCCGGGAAACCTTACTCGTGATCATCCTGGCATGATACAGGTGTATCTAGGAAGGGAAGGTGCACTTGATGTAGATGGTAAAGAGTTGCCTCGTCTTGTATACGTTTCTCGTGAGAAACGCCCTGGATATCAGCACCACAAGAAAGCTGGTGCTATGAATGCTCTTGTTCGAGTCTCTGCAGTCCTCACAAATGCACCATTCATCTTAAATCTGGATTGTGATCACTACGTCAACAATAGCAAAGCTGTAAGGGAAGCCATGTGTTTTCTAATGGACCCTCAGCTTGGAAAGAAGCTTTGCTATGTTCAGTTTCCTCAAAGATTTGATGGTATTGATCGTCACGACAGATACGCTAATCGGAATATTGTGTTCTTTGATATCAACATGCGAGGACTGGATGGAATCCAAGGACCAGTTTATGTTGGCACAGGATGCGTCTTCAACAGGCCGGCTTTATATGGATATGAACCACCAGTCTCTGAGAAAAGACAAAAGATGACATGCGATTGCTGGCCTTCGTGGTGTTCCTGCTGCTGCGGTGGTTCGAGGAAGTCGAAGTCGAAGAAGAAAGGAGAAAGAGGTTTGCTTGGAGGCCTGTTCACAAAGAAGAAGAAAATGATGGGGAAGAGTTACGTAAGGAAAGGGTCTGGACCAGTTTTTGATCTTGAAGAGATTGAAGAAGGGTTTGAAGGTTATGATGAGTTGGAGAAGTCATCACTTATGTCACAAAAGAATTTCGAGAAAAGATTCGGGCAGTCGCCAGTTTTCATCGCTTCCACCCTCAAGGAAGATGGAGGTCTTCCAGAAGGGACTAACAGCACATCACTTGTTAAAGAAGCCATCCATGTGATAAGCTGTGGTTATGAAGAGAAAACAGAATGGGGAAAAGAGGTTCGTGGCTGA 2196 47.95 MAGLVTGSQHNPHAADESLNGPRPSSKTCRVCGDEIGVHKEDGKVFVACLVCNFPVCRPCYEYERSEGNKCCPQCNTRYKRQKGSPRIIGDDEEADDADDFDEEFPIKHHNDDFETKQTNHLENDASNYNQQNWKQNVQTSFSVAGSVNGKEFEGEKEGYGNAEWKERIDKWKVRQEKRGLGNKQNEPEEDDYLLAEARQPLWRKVPIPSSKISPYRIVIVLRLVILALFFRFRILTPAYDAYPLWLISVICEIWFGISWILDQFPKWAPINRETYLDRLSMRFEREGEPNHLAPVDFFVSTVDPLKEPPIITANTVLSILAVDYPVEKVSCYVSDDGASMLLFDTLAETAEFARRWVPFCKKFSVEPRTPEFYFSQKMDYLKDKVVASFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNLTRDHPGMIQVYLGREGALDVDGKELPRLVYVSREKRPGYQHHKKAGAMNALVRVSAVLTNAPFILNLDCDHYVNNSKAVREAMCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNIVFFDINMRGLDGIQGPVYVGTGCVFNRPALYGYEPPVSEKRQKMTCDCWPSWCSCCCGGSRKSKSKKKGERGLLGGLFTKKKKMMGKSYVRKGSGPVFDLEEIEEGFEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLKEDGGLPEGTNSTSLVKEAIHVISCGYEEKTEWGKEVRG 731
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 66185329 66191374 - Hsped.03g12040.1 Hepe03g1204 566202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1204 731 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 103 IPR013083 -
Hepe03g1204 731 Coils Coil 394 414 - -
Hepe03g1204 731 CDD mRING-HC-C4C4_CesA 27 78 - -
Hepe03g1204 731 MobiDBLite consensus disorder prediction 11 25 - -
Hepe03g1204 731 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 397 588 IPR029044 -
Hepe03g1204 731 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 202 729 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Hepe03g1204 731 Pfam Cellulose synthase 296 729 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Hepe03g1204 731 Pfam Zinc-binding RING-finger 25 96 IPR027934 -
Hepe03g1204 731 SUPERFAMILY RING/U-box 23 101 - -
Hepe03g1204 731 SUPERFAMILY Nucleotide-diphospho-sugar transferases 310 583 IPR029044 -
Hepe03g1204 731 MobiDBLite consensus disorder prediction 1 25 - -
Hepe03g1204 731 FunFam Cellulose synthase 413 587 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1204 Hepe-Chr3:66185329 Hepe06g0198 Hepe-Chr6:7163101 1.03e-309 dispersed
Hepe03g1204 Hepe-Chr3:66185329 Hepe02g1128 Hepe-Chr2:13952233 2.71e-156 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1204 K10999 - csv:101205733 1278.46