Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1217 ATGGCTACTCAAGGTCAAGTTATCACCTGCAAAGCGGCGGTGGCCTGGGAACCCAATAAGCCATTGGTGATCGAGGATGTTCAGGTGGCTCCGCCGCAAGCCGGCGAGGTCCGAATCAAGATCCTCTACACTGCTCTTTGCCACACCGATGCTTATACCTGGAGCGGCAAGGACCCTGAAGGTCTCTTCCCTTGTATTCTTGGTCATGAGGCTGCAGGGATAGTAGAGAGTGTTGGTGAAGGCGTGACTGAAGTTCAGCCTGGAGACCATGTCATTCCTTGCTACCAAGCAGAATGTCGAGAATGCAAGTTTTGCAAATCAGGGAAAACAAACCTCTGTGGCAAGGTTCGTGCTGCCACTGGAGTTGGAGTAATGATGTCTGATCGTCAGAGTCGTTTCTCCATAAATGGAAAACCTATTTATCACTTCATGGGCACGTCAACATTTAGTCAATACACTGTTGTTCATGATGTGAGTGTTGCAAAGATTGATCCCGTGGCTCCTTTAGATAAAGTTTGCCTTCTTGGATGTGGCGTTCCCACAGGTCTTGGAGCTGTTTGGAACACAGCAAAAGTAGAGCCAGGGTCCAACGTTGCTATTTTTGGCCTGGGGACTGTAGGCCTCGCTGTGGCAGAAGGTGCTAAAGCAGCTGGTGCCTCACGTATAATTGGCATTGATATCGACAGCAAAAAGTTTGAAACTGCTAAGAAATTTGGAGCGACTGAATTTGTGAACCCAAAGGAACACGACAAACCAATTCAGGAAGTCATCGTTGATCTCACCGATGGCGGTGTTGACTATAGTTTTGAGTGCATAGGGAATGTCAGTGTGATGAGGTCTGCTCTGGAATGCTGCCACAAGGGCTGGGGGCAATCGATCATTGTGGGGGTTGCAGCATCGGGCCAGGAAATATCCACAAGGCCTTTCCAGTTAGTGACTGGTCGCGTCTGGAAAGGAACAGCTTTTGGTGGCTTCAAGAGCCGTTCTCAAGTGCCTTGGCTTGTTGAAAAGTACTTGAAGAAGGAAATCAAAGTTGATGAATACATAACCCACAATTTGACCCTGGAAGAGATCAACAAAGCCTTTGATTTGATGCATGGAGGCGATTGCCTGCGCTGCGTTCTTTCCGCCCATCCCTAA 1140 48.6 MATQGQVITCKAAVAWEPNKPLVIEDVQVAPPQAGEVRIKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTEVQPGDHVIPCYQAECRECKFCKSGKTNLCGKVRAATGVGVMMSDRQSRFSINGKPIYHFMGTSTFSQYTVVHDVSVAKIDPVAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAKAAGASRIIGIDIDSKKFETAKKFGATEFVNPKEHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGQSIIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLEEINKAFDLMHGGDCLRCVLSAHP 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 66348438 66355971 - Hsped.03g12170.1 Hepe03g1217 566215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1217 379 SUPERFAMILY GroES-like 3 193 IPR011032 -
Hepe03g1217 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 13 195 - -
Hepe03g1217 379 Gene3D - 13 372 - -
Hepe03g1217 379 PANTHER ALCOHOL DEHYDROGENASE 6 374 - GO:0004024(PANTHER)|GO:0005829(PANTHER)|GO:0008270(PANTHER)|GO:0046294(PANTHER)|GO:0051903(PANTHER)
Hepe03g1217 379 Pfam Zinc-binding dehydrogenase 206 334 IPR013149 -
Hepe03g1217 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
Hepe03g1217 379 Gene3D - 182 320 - -
Hepe03g1217 379 Pfam Alcohol dehydrogenase GroES-like domain 34 163 IPR013154 -
Hepe03g1217 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Hepe03g1217 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0008270(InterPro)|GO:0046294(InterPro)|GO:0051903(InterPro)
Hepe03g1217 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 320 - -
Hepe03g1217 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270(InterPro)|GO:0016491(InterPro)
Hepe03g1217 379 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 375 IPR014183 GO:0008270(InterPro)|GO:0046294(InterPro)|GO:0051903(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1217 K00121 - - csv:101208145 754.592
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1217 Hepe-Chr3:66348438 Hepe10g1462 Hepe-Chr10:51496253 5.95e-169 dispersed
Hepe03g1217 Hepe-Chr3:66348438 Hepe08g1462 Hepe-Chr8:17757655 1.27e-128 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi7g655 . . . . Bpe03g00931 . . . . . . . . . . Cpe17g00966 . . . . . . . . Cla09g00911 Cam09g0963 Cec09g0968 Cco09g0974 . . Cre09g0932 . . . . Lsi02g02009 Csa07g01410 . . . . Bda05g00876 . . . . . Sed14g0049 . . . Cma17g01364 Car08g00042 Car17g01262 . Cpe12g01165 Bhi12g02320 Tan06g1380 Cmetu09g0569 . Hepe03g1217 . . . . . . . . . . . . .
Vvi18g1208 . . . . . . . . . . . . Car01g00888 . . . . . . . . . . . . . . . . . . . . Cone17ag0800 Cone20ag0404 . . . . Blo17g00721 Blo18g00224 Bda08g01180 Bda13g01537 Bpe02g01599 Bpe14g00328 . Bma05g00197 Sed07g2855 Cmo01g01036 . . . . . . Cpe02g00894 Bhi09g01486 Tan01g3358 Cmetu01g1438 . Hepe03g1217 Mch11g1415 . Cla09g00911 Cam09g0963 Cec09g0968 Cco09g0974 . . Cre09g0932 . . Chy03g00638 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008593 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 1 1 1 1 1 4 1 1 35