Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1225 ATGGATGAGAGTTCAGGATCAAACAATGGAAACCACAGTGTTTCTTTTAATATCAAAGATGATTCTACAGCGGATTGTGTCCCTGTACTTTTCCTTCAGAAGTTGATTGCAGAGGTGATGGGGACATATTTCTTGATATTTGCCGGGGAAGCATCAGTAGTGGTGAATTTGAACAAAGATGGAGTCATCACTTTCCCCGGGATTTCAATTGTTTGGGGTTTGGTTGTAATGGTGATGATCTATTCTGTTGGCCATATATCTGGTGCTCATTTTAACCCTTCTGTCACCATAGCCTTTGCCATTACCAGGAGATTTCCATGGAAAGAGGTGCCAGCATATTTGGTAGCTCAAGTTATTGGATCAACATTAGCAAGTGGGACACTTAGGCTAATATTTAATGGAACACAAGACCACTTTCCGGGAACTCTCCCAAGTGACTCATATCTGCAGACCTTTGTGATTGAATTTATAATCACATTTTACCTCATGTTTGTGGTATCTGGTGTTGCCACTGACAATAGAGCCATTGGTGAGCTTGCTGGACTCGCCGTGGGTGCTACTGTACTTCTCAATGTGATGATTGCAGGGCCAATTACAGGAGCATCCATGAATCCAGCCAGAAGCTTGGGACCTGCTATAGTATTTAAACAGTTCAAAGGGTTATGGATCTATATGACAGCACCTATTCTAGGAGCAACTGCAGATGAGCATCCAGTTACCAAATTGTTCGACTTCTATGTATCAAAAGATATGGAAATGAACACGTACTTGATTTCACATGAACTAGATTGA 792 41.54 MDESSGSNNGNHSVSFNIKDDSTADCVPVLFLQKLIAEVMGTYFLIFAGEASVVVNLNKDGVITFPGISIVWGLVVMVMIYSVGHISGAHFNPSVTIAFAITRRFPWKEVPAYLVAQVIGSTLASGTLRLIFNGTQDHFPGTLPSDSYLQTFVIEFIITFYLMFVVSGVATDNRAIGELAGLAVGATVLLNVMIAGPITGASMNPARSLGPAIVFKQFKGLWIYMTAPILGATADEHPVTKLFDFYVSKDMEMNTYLISHELD 263
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 66523181 66524653 + Hsped.03g12250.1 Hepe03g1225 566223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1225 263 CDD MIP 33 234 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g1225 263 ProSitePatterns MIP family signature. 90 98 IPR022357 -
Hepe03g1225 263 PRINTS Major intrinsic protein family signature 222 242 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g1225 263 PRINTS Major intrinsic protein family signature 72 96 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g1225 263 PRINTS Major intrinsic protein family signature 154 172 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g1225 263 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g1225 263 PRINTS Major intrinsic protein family signature 109 128 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g1225 263 PRINTS Major intrinsic protein family signature 185 207 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g1225 263 PANTHER AQUAPORIN NIP2-1 25 234 IPR034294 -
Hepe03g1225 263 Pfam Major intrinsic protein 30 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g1225 263 NCBIfam MIP family channel protein 37 234 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g1225 263 SUPERFAMILY Aquaporin-like 29 233 IPR023271 -
Hepe03g1225 263 Gene3D Glycerol uptake facilitator protein. 8 235 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2066 Hepe-Chr2:50699984 Hepe03g1225 Hepe-Chr3:66523181 5.38e-78 dispersed
Hepe03g1225 Hepe-Chr3:66523181 Hepe06g0442 Hepe-Chr6:23783290 2.84e-161 dispersed
Hepe03g1225 Hepe-Chr3:66523181 Hepe03g1226 Hepe-Chr3:66533860 2.96e-88 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1225 K09874 - csv:101219297 373.629