Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1280 ATGAGTTGCTTTCCATGTTTTTCATCTCATGCAAGAGCAGCTAAAAGAACAAAGGGAAGGGAAAAGTCTGTTTCGTTGCATTCTCGCAGTCTTAAACAACAACAACCACAACAACAACAACATCATCATCATCATCATGGTCGTCCTCCACGCCCTACGTCTCGAGAACATTCAAAAGGAAACCAGGTACAAAAGGAAGCAGAAAAAGAGATTGATAATGGAGAAAAGTGCAATATTGCAGCTCAAACCTTCACCTTCAGAGAGCTGGCCACTGCTACAAAGAATTTCCGTCAAGAGTGTCTCATAGGAGAAGGAGGGTTTGGGAGAGTTTACAAAGGAAAACTTGATAAAACTAACCAGGTTGCAGCAGTGAAGCAGCTTGACAGAAATGGAATGCAAGGGAATAGAGAGTTTCTTGTGGAGGTTTTGATGCTAAGCCTTTTACACCATCCAAATCTTGTCAGTCTCATTGGCTATTGTGCAGATGGTGATCAAAGACTTTTGGTTTATGAGTATATGGCTTTGGGATCTCTAGAAGATCATCTACTTGACATTCCAGCTGAGAGAAAAGCATTGGATTGGGGAACAAGGATGAAAGTAGGGTTGGGAGCAGCAAAAGGGATAGAGTATTTACACGACAAAGCCAACCCACCAGTGATATACAGAGATTTGAAAGCATCAAACATTCTATTAGACAATGAATTCAATGCAAAGCTGTCTGATTTTGGTCTGGCAAAGCTTGGGCCTATGGGGGACAAGTCCCATGTTTCATCCAGGGTTATGGGAACCTATGGATATTGTGCTCCTGAGTATCAAAGGACTGGCCAACTCACTCTCAAATCTGATGTCTATAGCTTCGGAGTCGTCTTGTTGGAACTCATCACTGGCATGCGAGTTATCGACAACACTCGTCCAGTGAAACAACAAAACTTGGTCACTTGGGCAAGCCCAATATTCAAGGAACCAAATAGATTCATGGAGTTGGCAGATCCTCTTCTAGGTGGAGACTTCTCTGTGAGATCTCTCAACCAAGCAGTAGCGGTCGCCGCCATGTGCCTCCACGAGGAAGCGTCGGCCCGACCGTTGATCAGTGACGTTGTCACTGCTCTGAGCTTCTTGGGTGCGGAGGCCAGTCAGTCGTCATCTTCGCCTTCGTCTTCGTCTTCGTCTTCGTCTTCATCGTCAGGTGACGACCCTTCGCTATCAGATCAAAATTCGATCAATCTATCCAAATCCAATGACAACGAAAGAGCTGAGGCACGCCAGCGAGCGGTCGATGAAGCCATGGAATGGGGTTCATCCTCCAAGCAAAATGCTGCTGCTTTGCGCCCGGGAAGTTGTTCTTCCTTGTAA 1353 45.6 MSCFPCFSSHARAAKRTKGREKSVSLHSRSLKQQQPQQQQHHHHHHGRPPRPTSREHSKGNQVQKEAEKEIDNGEKCNIAAQTFTFRELATATKNFRQECLIGEGGFGRVYKGKLDKTNQVAAVKQLDRNGMQGNREFLVEVLMLSLLHHPNLVSLIGYCADGDQRLLVYEYMALGSLEDHLLDIPAERKALDWGTRMKVGLGAAKGIEYLHDKANPPVIYRDLKASNILLDNEFNAKLSDFGLAKLGPMGDKSHVSSRVMGTYGYCAPEYQRTGQLTLKSDVYSFGVVLLELITGMRVIDNTRPVKQQNLVTWASPIFKEPNRFMELADPLLGGDFSVRSLNQAVAVAAMCLHEEASARPLISDVVTALSFLGAEASQSSSSPSSSSSSSSSSSGDDPSLSDQNSINLSKSNDNERAEARQRAVDEAMEWGSSSKQNAAALRPGSCSSL 450
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 68312899 68317115 + Hsped.03g12800.1 Hepe03g1280 566278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1280 450 SUPERFAMILY Protein kinase-like (PK-like) 82 394 IPR011009 -
Hepe03g1280 450 CDD STKc_IRAK 102 370 - -
Hepe03g1280 450 MobiDBLite consensus disorder prediction 38 52 - -
Hepe03g1280 450 MobiDBLite consensus disorder prediction 378 450 - -
Hepe03g1280 450 ProSiteProfiles Protein kinase domain profile. 96 373 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g1280 450 PANTHER OS07G0668900 PROTEIN 39 393 - -
Hepe03g1280 450 Gene3D Transferase(Phosphotransferase) domain 1 173 395 - -
Hepe03g1280 450 ProSitePatterns Protein kinases ATP-binding region signature. 102 125 IPR017441 GO:0005524(InterPro)
Hepe03g1280 450 MobiDBLite consensus disorder prediction 53 72 - -
Hepe03g1280 450 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe03g1280 450 SMART serkin_6 96 373 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g1280 450 Pfam Protein kinase domain 98 367 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g1280 450 MobiDBLite consensus disorder prediction 378 413 - -
Hepe03g1280 450 MobiDBLite consensus disorder prediction 431 450 - -
Hepe03g1280 450 MobiDBLite consensus disorder prediction 10 72 - -
Hepe03g1280 450 Gene3D Phosphorylase Kinase; domain 1 56 172 - -
Hepe03g1280 450 FunFam Serine/threonine-protein kinase PBS1 69 172 - -
Hepe03g1280 450 FunFam Serine/threonine-protein kinase PBS1 173 389 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1280 Hepe-Chr3:68312899 Hepe05g1473 Hepe-Chr5:64166351 1.12e-165 dispersed
Hepe10g1608 Hepe-Chr10:52799028 Hepe03g1280 Hepe-Chr3:68312899 3.32e-61 dispersed
Hepe03g1280 Hepe-Chr3:68312899 Hepe07g1185 Hepe-Chr7:28179256 1.24e-162 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72661 PF00069 Pkinase 1.80E-45 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1280 - - - 0.0