Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1287 ATGGACCTGCAGCTCTTGTGGGTTGCCTTCTTTCTTTGCTGTGGATTTTGGATTCTTGCTTTGAGTGATCAAGATGGTTTCCTAAGCTTGTCTTGTGGAGGAACTACCACCTTCACTGACTCATCCAACATCTCATGGATTCCGGACATCGACTACATCGGATCCGGTAACACGTCAATCGTCGACAATGGCAAGGACGGATCCTTTTCCATTCGCCATGTTCGGTTCTTCCCCGACCCCCGAGCGCGAAACTGTTACAAGCTCCCACTGAAAAATGGCTCCTCATCAGTTCTCATCAGAGCTCAGTTTGTGTACAAAAACTATGACAAGCTTGGGAAGCCCCCTGTTTTCTCTGTTTCTATTGGAACAGCCATAACTAGCAATGTGAACCTCAGTTCTCATGACCCTTGGATTGAGGAGTTTGTATGGCCAGTTAACAAGGAAACTGTCTCATTTTGTTTGCATTCAATTCCTGAGGGTGGCAGCCCTCTGATTTCTTCGCTCGAACTCCGACCGCTACCGTGGGGAGCGTACGACGATGGCTTGCTTCGGAGTCAAGCTCTTAGAAAGTCCTATCGAATCAATTGTGGTTACACTAATGGATCTCTCAGGTACCCGATGGATCAATACGATCGAATATGGGAGGCGGATCGCAACTTCAAGCCATTTCATGTGTCATCAGGGTTCAAAGTTGAGGTCAACTTTGATATGATAGGAGTGAAGGAAGCTCCACCAGTTGTAGTGGTTGAAACAGCTAGGGTTTTGGCAAGAAGAGATGAGCTAAGCTACAACCTCCCACTTGAAGAAGAAGAAGAAAGAGATTACTTTGTGATTCTTTATTTTGGTGGGATTCTTGCTGTTCATCCTTCATTTGATGTGTTGATGAATGGGAGAATTATAGAATCAAATTACAGTGTTGAAAAGGGAGAGATGAGGGCTTTGTATGTAATTCAAGAGCAAATCAAGAACTTGAAAATCACTTTCAAGAGTGTTAAATTCTATCCTCAAGTCAATGCCATTGAAGTCTATCAGATTCTTCATGTTCCTTTCGAATTGCAAGAATTCGGGTCGAAAATCGACATAAACTTTAGAAAATCTCTTGCAGTTTCAGCCCTTAAGGTGATTCATCAATCTACTGGTTTGAATTTAGGATGGGAAGATGATCCATGTTCCCCAAGAACATGGGATCATGTTGGATGTGAAGGAAACCTTGTTACATCTCTGGAGCTTTCCAACGTCAACTTGAGGTCGATCAGCCCGACGTTTGGCGACATTCTCGATCTCAAAATACTGGATTTGCACAACAGTTCACTTTCAGGGCAAATAGAAAATTTGGGCAGCCTGACCCATCTTGAAAATTTGAACTTGAGTTTCAACAAACTAACATCATTTGGGTCAGATTTGGACAACCTAAGCAACCTCAAAATTCTGGACTTGCAGAACAATAGTCTGCAGGGAATTGTTCCTGACAGCTTGGGAGAACTTGAAGATCTTCAACTCTTGAATCTGGAGAACAATAGGCTAGAAGGCACCCTCCCATTGTCTTTGGACAAAGGAAGTCTGGAAATTAGAACAACAGGAAATCTTTGCCTCTCTTTCTCCACAATGACATGCAATGATGTTTCATCAAATCCAGTGATTGAAACACCACAAGTCACAGTGGTTCCTGAGAAGAAGAAGGAGATGAGCAGCCATAATCATATGCCAATCACAATCATTGTTTGTGCAGTTGCAGCAACTTTGCTTCTTCTCATCACTCTCTCTATCTCACTTCTACTCTACATGAGGAAGCATTATTCTCAACACACAACTCAACTCTCATACTCAACAAAGGCAGCAATGGAGCTAAGGAATTGGAACTCTGCAAAAGTATTCTCGTACAAGGAGATAAAGGCAGCTACAAACAACTTCAAGGAGGTGATTGGCAGAGGAAGCTTTGGATCTGTTTATCTTGGAAAGCTTCCTGAGGGAAAACTTGTGGCTGTCAAAGTAAGGTTTGACAAAACCCAACTTGGAGCTGACTCCTTTATCAATGAGGTTCATCTCTTGTCTCAAATTCGTCATCAAAATCTTGTTTGTTTGGAAGGATTTTGTAGCGAATCGAAACGACAAATACTTGTTTATGAGTATTTACCTTGTGGATCCTTGGCTGACCACATCTATGGCAAGAACAGAAAAAGTGCTTCACTTAGCTGGATTAGAAGACTCAAAGTTGCTGTTGATGCAGCAAAAGGGTTGGACTACTTACACAATGGAAGTGAACCAAGAATAATCCACCGTGATGTGAAGTGTAGTAACATTCTTTTGGATATGGAAATGAATGCAAAAGTTTGTGACTTTGGGCTCTCCAAGCAAATACCACACTCTGATGCAACTCATGTCACCACTGTTGTCAAAGGCACTGCTGGTTATTTGGATCCTGAGTATTACTCGACTCAACAATTAACCGAAAAGAGTGATGTTTATAGTTTTGGAGTTGTTTTATTGGAGCTCATATGTGGACGAGAGCCTTTGAGTCACACTGGAACTCCAGATTCTTTCAACTTGGTGTTATGGGCAAAACCGTACTTGCAAGCAGGTGCATTTGAGATAGTAGATGAAAGTTTGAGAGGAAGGTTTGATGTTGAAAGCATGAAGAAGGCAGCTCTTATTGCTATAAGGTGTGTAGGGAGAGATGCTTCCCAAAGGCCTAATATAGGACAAGTTTTGGCTCACCTTAAACAAGCTTATGATGCACAAGTTGCATACCTTTCTACTTTTGATCATTGA 2769 42.11 MDLQLLWVAFFLCCGFWILALSDQDGFLSLSCGGTTTFTDSSNISWIPDIDYIGSGNTSIVDNGKDGSFSIRHVRFFPDPRARNCYKLPLKNGSSSVLIRAQFVYKNYDKLGKPPVFSVSIGTAITSNVNLSSHDPWIEEFVWPVNKETVSFCLHSIPEGGSPLISSLELRPLPWGAYDDGLLRSQALRKSYRINCGYTNGSLRYPMDQYDRIWEADRNFKPFHVSSGFKVEVNFDMIGVKEAPPVVVVETARVLARRDELSYNLPLEEEEERDYFVILYFGGILAVHPSFDVLMNGRIIESNYSVEKGEMRALYVIQEQIKNLKITFKSVKFYPQVNAIEVYQILHVPFELQEFGSKIDINFRKSLAVSALKVIHQSTGLNLGWEDDPCSPRTWDHVGCEGNLVTSLELSNVNLRSISPTFGDILDLKILDLHNSSLSGQIENLGSLTHLENLNLSFNKLTSFGSDLDNLSNLKILDLQNNSLQGIVPDSLGELEDLQLLNLENNRLEGTLPLSLDKGSLEIRTTGNLCLSFSTMTCNDVSSNPVIETPQVTVVPEKKKEMSSHNHMPITIIVCAVAATLLLLITLSISLLLYMRKHYSQHTTQLSYSTKAAMELRNWNSAKVFSYKEIKAATNNFKEVIGRGSFGSVYLGKLPEGKLVAVKVRFDKTQLGADSFINEVHLLSQIRHQNLVCLEGFCSESKRQILVYEYLPCGSLADHIYGKNRKSASLSWIRRLKVAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMEMNAKVCDFGLSKQIPHSDATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLSHTGTPDSFNLVLWAKPYLQAGAFEIVDESLRGRFDVESMKKAALIAIRCVGRDASQRPNIGQVLAHLKQAYDAQVAYLSTFDH 922
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 68468596 68479310 + Hsped.03g12870.1 Hepe03g1287 566285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1287 922 ProSitePatterns Protein kinases ATP-binding region signature. 641 663 IPR017441 GO:0005524(InterPro)
Hepe03g1287 922 Pfam Leucine rich repeat 450 508 IPR001611 GO:0005515(InterPro)
Hepe03g1287 922 SMART serkin_6 635 906 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g1287 922 ProSiteProfiles Protein kinase domain profile. 635 908 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g1287 922 SUPERFAMILY Protein kinase-like (PK-like) 618 906 IPR011009 -
Hepe03g1287 922 Pfam Protein kinase domain 637 905 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g1287 922 FunFam serine/threonine-protein kinase PBS1-like 603 710 - -
Hepe03g1287 922 Gene3D Ribonuclease Inhibitor 363 541 IPR032675 -
Hepe03g1287 922 SMART LRR_typ_2 471 494 IPR003591 -
Hepe03g1287 922 SMART LRR_typ_2 495 519 IPR003591 -
Hepe03g1287 922 SMART LRR_typ_2 448 470 IPR003591 -
Hepe03g1287 922 Pfam Malectin-like domain 30 345 IPR024788 -
Hepe03g1287 922 PANTHER OS07G0107800 PROTEIN-RELATED 467 909 - -
Hepe03g1287 922 Gene3D - 189 345 - -
Hepe03g1287 922 SUPERFAMILY L domain-like 371 518 - -
Hepe03g1287 922 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 711 917 - -
Hepe03g1287 922 Gene3D Phosphorylase Kinase; domain 1 608 710 - -
Hepe03g1287 922 CDD STKc_IRAK 641 908 - -
Hepe03g1287 922 Gene3D Transferase(Phosphotransferase) domain 1 711 918 - -
Hepe03g1287 922 ProSiteProfiles Leucine-rich repeat profile. 450 472 IPR001611 GO:0005515(InterPro)
Hepe03g1287 922 ProSitePatterns Serine/Threonine protein kinases active-site signature. 757 769 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1287 Hepe-Chr3:68468596 Hepe10g1553 Hepe-Chr10:52258371 6.66e-115 dispersed
Hepe09g1350 Hepe-Chr9:21021532 Hepe03g1287 Hepe-Chr3:68468596 6.87e-51 dispersed
Hepe10g1700 Hepe-Chr10:53696935 Hepe03g1287 Hepe-Chr3:68468596 5.94e-59 dispersed
Hepe03g1287 Hepe-Chr3:68468596 Hepe03g1488 Hepe-Chr3:71709024 2.87e-76 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72662 PF12819 Malectin_like 3.00E-53 CL0202 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1287 - - - 0.0