Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1340 ATGGAGAACGAATTCTTCCTCAATGCTACTGGAATCTCTCAATCTCTTATGCATTTCGACTCCAATAATCCTTCCATGGCGAACTGGCATCACCACCACCACCAGTTTTCCTCCGCCATGGATGTTCAAGTTCAAGTTCAAGTTCAACCTCAAGTTCCAGAGCTTAATAACAACCACTCTTCTTCCTCTCAACAATCCCCACCGCCGGATTGCTTTCTCAATCCACTTCCCAATCACACCTTCCAATTCGATTCGGTGAATTCTAACCTAACCAGCGACGGCTTCGTCATCAGAGAACTCATCGGCAAATTAGGTGCAAATTCCGAGACCAGAATCTTGGAATTGAATTCTTCTTCTTCGATTGTGCCGGAATTTTCGCCCGATCCTGGATTTGCAGAGCGAGCCGCTAGGTTTTCGTGTTTTGGAAGTAGGAGCTTCAATGGCCGTCAATTCTCTAATCTCAGATCTCACCTCTCCATCGCTGAAGAGAAATTGAGCCGAGTTTCGAGTAGTCCGTCGCTTAAAGCGCTCGGATCTGAATCCAATTTGCAAGAACACAACAACAATTCCTCATCGCAAGAAGACGAATCCTCTCTCTCCAATCCAGACAAGCCGATTTCGAATCCACGGAAGAGAAAGGCAATTGCGAAACCGAAACTCAAAGAACCGGTGGTTGAAGCTCCCGAAAAGGAAACTCCGAAGAAATTGAAGGCAGTGGAAACGAAGGAAGACGAAAAGGTGAAAACAGAAGAGGATTCGAAGAAAAGCGATGGAAATTTAGCGGAAGAAAAGCAAACCAAGACGAATTCGAAACCTCCTGAAGCTCCTAAAGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGATAGCCATAGCCTTGCTGAAAGAGTTAGAAGAGAGAAGATCAGTGAAAGAATGAAGCTTCTTCAAGATCTTGTACCAGGTTGCAACAAGGTTACTGGAAAAGCTCTAATGCTTGATGAGATAATCAACTATGTGCAGTCCTTGCAACACCAAGTTGAGTTTCTATCGATGAAGTTGTCATCTGTGAATACAACCAGGGTGGATTTCAACATGGATTCTCTTATCTCAAAACAAATGTACCAATCAGGAACCAGTTTGACACATCCTCAAATTTGCCCAATAGATTCCTCAGCTTCAAGCTTTTATGGGCACCAAAATCCCTCTCTTCCAACCACCTCTCATTGCTCTGTGGACCCTCTTGACTCTGTTTTATGCCAAAATCTTCATACTCAACTCCCTTCTCTCAATCCCTTCTCTCAAAATCCCTCTCAGTATCCAAGTTTTGGTGAAGATGAACTTCAAAGCATTGTTCAGATGGGATTTCTCCAAAATCAGTCCCAAGAAATATCATTGCAATCTCACAACTTCAACCTAGGCTCAGACCAAATGAAAATTGAACTCTGA 1434 43.44 MENEFFLNATGISQSLMHFDSNNPSMANWHHHHHQFSSAMDVQVQVQVQPQVPELNNNHSSSSQQSPPPDCFLNPLPNHTFQFDSVNSNLTSDGFVIRELIGKLGANSETRILELNSSSSIVPEFSPDPGFAERAARFSCFGSRSFNGRQFSNLRSHLSIAEEKLSRVSSSPSLKALGSESNLQEHNNNSSSQEDESSLSNPDKPISNPRKRKAIAKPKLKEPVVEAPEKETPKKLKAVETKEDEKVKTEEDSKKSDGNLAEEKQTKTNSKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLSSVNTTRVDFNMDSLISKQMYQSGTSLTHPQICPIDSSASSFYGHQNPSLPTTSHCSVDPLDSVLCQNLHTQLPSLNPFSQNPSQYPSFGEDELQSIVQMGFLQNQSQEISLQSHNFNLGSDQMKIEL 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 69805215 69808006 + Hsped.03g13400.1 Hepe03g1340 566338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1340 477 Pfam Helix-loop-helix DNA-binding domain 292 339 IPR011598 GO:0046983(InterPro)
Hepe03g1340 477 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 288 338 IPR011598 GO:0046983(InterPro)
Hepe03g1340 477 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 123 450 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Hepe03g1340 477 FunFam Basic helix-loop-helix transcription factor 285 357 - -
Hepe03g1340 477 MobiDBLite consensus disorder prediction 163 205 - -
Hepe03g1340 477 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 286 353 IPR036638 GO:0046983(InterPro)
Hepe03g1340 477 SMART finulus 294 344 IPR011598 GO:0046983(InterPro)
Hepe03g1340 477 MobiDBLite consensus disorder prediction 54 69 - -
Hepe03g1340 477 MobiDBLite consensus disorder prediction 163 278 - -
Hepe03g1340 477 CDD bHLH_AtBPE_like 278 364 - -
Hepe03g1340 477 Gene3D - 285 357 IPR036638 GO:0046983(InterPro)
Hepe03g1340 477 MobiDBLite consensus disorder prediction 54 74 - -
Hepe03g1340 477 MobiDBLite consensus disorder prediction 218 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1340 Hepe-Chr3:69805215 Hepe05g1307 Hepe-Chr5:61222815 5.62e-67 dispersed
Hepe03g1340 Hepe-Chr3:69805215 Hepe02g0492 Hepe-Chr2:4842224 3.29e-41 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55281 PF00010 HLH 3.60E-06 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1340 - - - 0.0