Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe03g1340 | ATGGAGAACGAATTCTTCCTCAATGCTACTGGAATCTCTCAATCTCTTATGCATTTCGACTCCAATAATCCTTCCATGGCGAACTGGCATCACCACCACCACCAGTTTTCCTCCGCCATGGATGTTCAAGTTCAAGTTCAAGTTCAACCTCAAGTTCCAGAGCTTAATAACAACCACTCTTCTTCCTCTCAACAATCCCCACCGCCGGATTGCTTTCTCAATCCACTTCCCAATCACACCTTCCAATTCGATTCGGTGAATTCTAACCTAACCAGCGACGGCTTCGTCATCAGAGAACTCATCGGCAAATTAGGTGCAAATTCCGAGACCAGAATCTTGGAATTGAATTCTTCTTCTTCGATTGTGCCGGAATTTTCGCCCGATCCTGGATTTGCAGAGCGAGCCGCTAGGTTTTCGTGTTTTGGAAGTAGGAGCTTCAATGGCCGTCAATTCTCTAATCTCAGATCTCACCTCTCCATCGCTGAAGAGAAATTGAGCCGAGTTTCGAGTAGTCCGTCGCTTAAAGCGCTCGGATCTGAATCCAATTTGCAAGAACACAACAACAATTCCTCATCGCAAGAAGACGAATCCTCTCTCTCCAATCCAGACAAGCCGATTTCGAATCCACGGAAGAGAAAGGCAATTGCGAAACCGAAACTCAAAGAACCGGTGGTTGAAGCTCCCGAAAAGGAAACTCCGAAGAAATTGAAGGCAGTGGAAACGAAGGAAGACGAAAAGGTGAAAACAGAAGAGGATTCGAAGAAAAGCGATGGAAATTTAGCGGAAGAAAAGCAAACCAAGACGAATTCGAAACCTCCTGAAGCTCCTAAAGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGATAGCCATAGCCTTGCTGAAAGAGTTAGAAGAGAGAAGATCAGTGAAAGAATGAAGCTTCTTCAAGATCTTGTACCAGGTTGCAACAAGGTTACTGGAAAAGCTCTAATGCTTGATGAGATAATCAACTATGTGCAGTCCTTGCAACACCAAGTTGAGTTTCTATCGATGAAGTTGTCATCTGTGAATACAACCAGGGTGGATTTCAACATGGATTCTCTTATCTCAAAACAAATGTACCAATCAGGAACCAGTTTGACACATCCTCAAATTTGCCCAATAGATTCCTCAGCTTCAAGCTTTTATGGGCACCAAAATCCCTCTCTTCCAACCACCTCTCATTGCTCTGTGGACCCTCTTGACTCTGTTTTATGCCAAAATCTTCATACTCAACTCCCTTCTCTCAATCCCTTCTCTCAAAATCCCTCTCAGTATCCAAGTTTTGGTGAAGATGAACTTCAAAGCATTGTTCAGATGGGATTTCTCCAAAATCAGTCCCAAGAAATATCATTGCAATCTCACAACTTCAACCTAGGCTCAGACCAAATGAAAATTGAACTCTGA | 1434 | 43.44 | MENEFFLNATGISQSLMHFDSNNPSMANWHHHHHQFSSAMDVQVQVQVQPQVPELNNNHSSSSQQSPPPDCFLNPLPNHTFQFDSVNSNLTSDGFVIRELIGKLGANSETRILELNSSSSIVPEFSPDPGFAERAARFSCFGSRSFNGRQFSNLRSHLSIAEEKLSRVSSSPSLKALGSESNLQEHNNNSSSQEDESSLSNPDKPISNPRKRKAIAKPKLKEPVVEAPEKETPKKLKAVETKEDEKVKTEEDSKKSDGNLAEEKQTKTNSKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQHQVEFLSMKLSSVNTTRVDFNMDSLISKQMYQSGTSLTHPQICPIDSSASSFYGHQNPSLPTTSHCSVDPLDSVLCQNLHTQLPSLNPFSQNPSQYPSFGEDELQSIVQMGFLQNQSQEISLQSHNFNLGSDQMKIEL | 477 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 69805215 | 69808006 | + | Hsped.03g13400.1 | Hepe03g1340 | 566338 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe03g1340 | 477 | Pfam | Helix-loop-helix DNA-binding domain | 292 | 339 | IPR011598 | GO:0046983(InterPro) | |
Hepe03g1340 | 477 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 288 | 338 | IPR011598 | GO:0046983(InterPro) | |
Hepe03g1340 | 477 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 123 | 450 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Hepe03g1340 | 477 | FunFam | Basic helix-loop-helix transcription factor | 285 | 357 | - | - | |
Hepe03g1340 | 477 | MobiDBLite | consensus disorder prediction | 163 | 205 | - | - | |
Hepe03g1340 | 477 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 286 | 353 | IPR036638 | GO:0046983(InterPro) | |
Hepe03g1340 | 477 | SMART | finulus | 294 | 344 | IPR011598 | GO:0046983(InterPro) | |
Hepe03g1340 | 477 | MobiDBLite | consensus disorder prediction | 54 | 69 | - | - | |
Hepe03g1340 | 477 | MobiDBLite | consensus disorder prediction | 163 | 278 | - | - | |
Hepe03g1340 | 477 | CDD | bHLH_AtBPE_like | 278 | 364 | - | - | |
Hepe03g1340 | 477 | Gene3D | - | 285 | 357 | IPR036638 | GO:0046983(InterPro) | |
Hepe03g1340 | 477 | MobiDBLite | consensus disorder prediction | 54 | 74 | - | - | |
Hepe03g1340 | 477 | MobiDBLite | consensus disorder prediction | 218 | 278 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe03g1340 | Hepe-Chr3:69805215 | Hepe05g1307 | Hepe-Chr5:61222815 | 5.62e-67 | dispersed | |
Hepe03g1340 | Hepe-Chr3:69805215 | Hepe02g0492 | Hepe-Chr2:4842224 | 3.29e-41 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55281 | PF00010 | HLH | 3.60E-06 | No_clan | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe03g1340 | - | - | - | 0.0 |