Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1378 ATGGGTGTTGGGAGCCGGAGGAGAGAGAAAAAGATGATTTGGAAGTGGACGGAGCTGGTTTCTCTCATCATTCTTTGCATTCTTGGGTTGAAGCCTACCTCCATTCAAGGAGCCACAGATCCAACAGATGCTTCTGCTTTAAGAGTTTTGTACACCAGCTTAAACTCGCCGTCTCAGTTAACCCAGTGGAACGCAAATGGCGATGATCCATGTGGACAATCATGGAAGGGGATTACTTGCTCTGGCTCACGGGTTACAGAAATAAACTTATCTGGCCTTGGGCTCAGTGGATCGCTCGGATATCAGCTCGCAAGTTTGACATCGGTAACCAACCTAGATGTGAGCAATAACAATATTGGAGGCGAGATAGTCTACCAACTTCCACCAAACCTACAGAGATTAAATCTTGCTCGAAACAACTTCAATAAAGGCCTCCCGTATTCCATTTCCTTGATGACTACTCTTCAATACTTAAATCTCAGTCATAATCAGCTTCAGGATGCATTGATTGATATGTTTGGGCAGCTTACTTCCCTATCCACATTGGATCTGTCTTTCAACTCTATGTCAGGCAACCTGCCTCAGAGTTTCAGCTCTCTTTCTAGCATCAGCACTATGTATTTGCAAAACAATCAGTTCACTGGCACAATTGATGTCCTCGCAAATCTTCCTCTTAATAACCTGAATGTTGAAAATAACCGTTTCACTGGCTGGATCCCTGAACCACTGAAAAACATCAATCTGCAGAAAGAAGGAAACTCCTGGAGCTCAGGTCCTGCACCCCCTCCTCCACCTGGTACACCACCAGCCACCAGAAGGAGCGGAAATCGCAATTCTGGTAGTCGTAGTCCATCAAATGGTGGTTCTAGTGAAGGTGGGAAATCAGGAATTAGTGGTGGTGGCATTGCAGGAATAATCATCTCCGTGCTTGTCGTTGGAGCTGTAGTAGCATTCTTCCTCATCAGGAGGAGATCCAAGAGATCACCTTCAGACATTGAAAAGCTCGACAATCAACCCCTGCAACCTCTTAATATGATTTCAGCACAAGAAATAAAACGGGAAGAGACTTCCTCCACATTTTATCCAACAACATTTGAGACTTCTGCTGCAATTAATCTTAAACCCCCACCTAGTGATCGTCATAAATCATTTGATGAAGACGACTTTGCAAAAAGACCAGTTGTCAAGAAGAAGGCTAGTGCAGCTCCTATTAATGTAAAGTCATATTCAATAGCAGACCTGCAAATAGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCGTTTGGACGTGTTTATCGGGCTGAGTTTGATGATGGAAAGATTCTTGCCGTGAAAAAAATAAATTCGTCTGCAGTGCCTAGGGAATTATCTGAAGATTTCACTGACATTGTTTCAAAAGTCTCCCAGTTGCACCATCCCAATATAACTGAGCTCGTGGGTTATTGCTCAGAGCATGGCCAGCATTTGCTTGTGTATGAGTTCCATAAAAATGGCTCGCTTTATGACTTATTGCATCTATCAGATGAATACAACAAGCCACCGATATGGAATTCCCGTGTTAAGATTGCTTTGGGAACAGCACGTGCATTAGAGTATCTTCACGAAGTTTGCTCCCCATCAATTGTTCATAGAAACATGAAGTCCGCTAACATATTGCTGGATGCCGAACTCAGCCCTCACCTTTCTGATTCTGGACTGGAAAGCTTTACAGAAAATGCAGATCAGGCACTGGATCACAATGCAAGTTCGGGATACACTGCCCCCGAAGTTACCATGTCTGGCCAATATACTCTGAAAAGCGATGTCTACAGTTTTGGAGTAGTCATGTTGGAACTGCTCACTGGACGCAAACCATTCGATAGTTCAAGGGCGAGGGCGGAGCAATCTTTGGTTCGATGGGCTACACCTCAGCTTCATGACATTGATGCTTTGACCAAGATGGTTGATCCAGAACTCCAAGGGCTTTATCCAGTTAAATCCATCTCCCGATTTGCAGATGTGATTGCACTTTGTGTCCAGACCGAACCTGAGTTCAGACCTCCAATGTCGGAGGTGGTGGAAGCGTTGGTTCGTCTGGTGCAGCGAGCTAACATGAGTAAGAGAACGTTTGGAGCTGATAATGCAGCATCTCCAAGAGGGGACGGTGGGGAGGACACACCATAA 2175 44.83 MGVGSRRREKKMIWKWTELVSLIILCILGLKPTSIQGATDPTDASALRVLYTSLNSPSQLTQWNANGDDPCGQSWKGITCSGSRVTEINLSGLGLSGSLGYQLASLTSVTNLDVSNNNIGGEIVYQLPPNLQRLNLARNNFNKGLPYSISLMTTLQYLNLSHNQLQDALIDMFGQLTSLSTLDLSFNSMSGNLPQSFSSLSSISTMYLQNNQFTGTIDVLANLPLNNLNVENNRFTGWIPEPLKNINLQKEGNSWSSGPAPPPPPGTPPATRRSGNRNSGSRSPSNGGSSEGGKSGISGGGIAGIIISVLVVGAVVAFFLIRRRSKRSPSDIEKLDNQPLQPLNMISAQEIKREETSSTFYPTTFETSAAINLKPPPSDRHKSFDEDDFAKRPVVKKKASAAPINVKSYSIADLQIATGSFNVENLLGEGSFGRVYRAEFDDGKILAVKKINSSAVPRELSEDFTDIVSKVSQLHHPNITELVGYCSEHGQHLLVYEFHKNGSLYDLLHLSDEYNKPPIWNSRVKIALGTARALEYLHEVCSPSIVHRNMKSANILLDAELSPHLSDSGLESFTENADQALDHNASSGYTAPEVTMSGQYTLKSDVYSFGVVMLELLTGRKPFDSSRARAEQSLVRWATPQLHDIDALTKMVDPELQGLYPVKSISRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTFGADNAASPRGDGGEDTP 724
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 70423070 70428447 + Hsped.03g13780.1 Hepe03g1378 566376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1378 724 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 499 707 - -
Hepe03g1378 724 ProSitePatterns Protein kinases ATP-binding region signature. 427 450 IPR017441 GO:0005524(InterPro)
Hepe03g1378 724 Gene3D Ribonuclease Inhibitor 40 263 IPR032675 -
Hepe03g1378 724 Pfam Protein tyrosine and serine/threonine kinase 423 693 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe03g1378 724 ProSiteProfiles Protein kinase domain profile. 421 696 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g1378 724 SUPERFAMILY Protein kinase-like (PK-like) 403 693 IPR011009 -
Hepe03g1378 724 PANTHER LEUCINE RICH REPEAT KINASE 2 302 695 IPR051420 -
Hepe03g1378 724 Pfam Leucine rich repeat N-terminal domain 41 81 IPR013210 -
Hepe03g1378 724 Gene3D Transferase(Phosphotransferase) domain 1 500 714 - -
Hepe03g1378 724 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 385 498 - -
Hepe03g1378 724 Pfam Leucine rich repeat 154 213 IPR001611 GO:0005515(InterPro)
Hepe03g1378 724 MobiDBLite consensus disorder prediction 249 295 - -
Hepe03g1378 724 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 40 266 - -
Hepe03g1378 724 Pfam Leucine Rich Repeat 130 150 IPR001611 GO:0005515(InterPro)
Hepe03g1378 724 CDD STKc_IRAK 427 696 - -
Hepe03g1378 724 SUPERFAMILY L domain-like 39 245 - -
Hepe03g1378 724 Pfam Leucine Rich repeat 107 124 IPR001611 GO:0005515(InterPro)
Hepe03g1378 724 MobiDBLite consensus disorder prediction 271 293 - -
Hepe03g1378 724 Gene3D Phosphorylase Kinase; domain 1 386 498 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1378 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2146 Hepe-Chr2:57961275 Hepe03g1378 Hepe-Chr3:70423070 4.86e-150 dispersed
Hepe03g1378 Hepe-Chr3:70423070 Hepe07g1580 Hepe-Chr7:54699284 1.99e-145 dispersed
Hepe08g2166 Hepe-Chr8:60927206 Hepe03g1378 Hepe-Chr3:70423070 1.42e-13 dispersed
Hepe02g1584 Hepe-Chr2:21031314 Hepe03g1378 Hepe-Chr3:70423070 9.06e-269 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g0159 . 34 783 Strubbelig Receptor Gene Family AT4G03390 61.7 3.8e-208 721.8
Hepe04g1828 . 29 752 Strubbelig Receptor Gene Family AT4G03390 55.1 8.7e-160 561.2
Hepe02g2146 . 22 616 Strubbelig Receptor Gene Family AT1G78980 52.0 3.1e-164 575.9
Hepe02g1584 . 30 715 Strubbelig Receptor Gene Family AT1G78980 52.2 7.1e-153 538.1
Hepe03g1378 . 18 702 Strubbelig Receptor Gene Family AT1G78980 51.3 6.9e-132 468.4
Hepe03g1378 . 18 697 Strubbelig Receptor Gene Family AT3G13065 50.1 4.3e-110 396.0
Hepe07g1580 . 389 682 Strubbelig Receptor Gene Family AT1G11130 53.7 2.1e-85 313.9
Hepe02g0159 . 34 783 Strubbelig Receptor Gene Family AT4G03390 61.7 3.8e-208 721.8
Hepe04g1828 . 29 752 Strubbelig Receptor Gene Family AT4G03390 55.1 8.7e-160 561.2
Hepe03g1378 . 18 697 Strubbelig Receptor Gene Family AT3G13065 50.1 4.3e-110 396.0
Hepe02g2146 . 22 616 Strubbelig Receptor Gene Family AT1G78980 52.0 3.1e-164 575.9
Hepe02g1584 . 30 715 Strubbelig Receptor Gene Family AT1G78980 52.2 7.1e-153 538.1
Hepe03g1378 . 18 702 Strubbelig Receptor Gene Family AT1G78980 51.3 6.9e-132 468.4
Hepe02g1584 . 11 715 Strubbelig Receptor Gene Family AT1G53730 60.9 7.4e-214 740.7
Hepe03g1378 . 12 710 Strubbelig Receptor Gene Family AT1G53730 61.4 1.8e-191 666.4
Hepe02g1584 . 13 710 Strubbelig Receptor Gene Family AT3G14350 51.5 1.2e-184 643.7
Hepe03g1378 . 21 714 Strubbelig Receptor Gene Family AT3G14350 53.3 8.5e-167 584.3
Hepe07g1580 . 150 712 Strubbelig Receptor Gene Family AT4G22130 64.0 4.8e-176 614.8
Hepe02g1584 . 394 722 Strubbelig Receptor Gene Family AT4G22130 62.8 1.1e-119 427.6
Hepe03g1378 . 403 716 Strubbelig Receptor Gene Family AT4G22130 64.9 1.9e-116 416.8
Hepe02g0159 . 480 775 Strubbelig Receptor Gene Family AT4G22130 61.3 6.2e-107 385.2
Hepe04g1828 . 439 752 Strubbelig Receptor Gene Family AT4G22130 56.2 6.8e-98 355.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72664 PF07714 PK_Tyr_Ser-Thr 1.50E-42 CL0016 Hepe PK