Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1383 ATGAAAGAGACCCATAATACAATGGAAACCCCCATCGCCGCCGGAATCCCAAATTCCGGCCACCACCACCACCAACCCCCCAAAAAACCCAACAAAAAAAAGCTCTTAATCCTCGCCCTCTCCTCCACCCTCCTCCTCGTCGGCGCCGTCGCCGGCATTGTCGCCGGAGTAACAAATTCCCAAAACTCCGGCGACCGATCCAACTCCGGCGCACACGCCATTCTGAAGAGCACGTGCAGCAGCACGCTCTATCCCGATCTGTGCTTCTCGACGATTTCCGAGTCGAAAGAGTTCGCGACGAAGAAAGTCGCGAATCAAAAAGACGTAATCGAGCTTTCGATCAACATTACTCTGAAAGCTGTGGAGGAAAATTACTTCAAAGTCCAGAAATTGGCGGCGCTGAAGAACATTACTCACAGAGAGAAAATTGCGCTTCATGATTGTCTCGAGACGATCGATGAAACGCTTGATGAACTTCATAAGGCGATTGCTGATCTCCATCAATATCCTAATAAGAAGTCTCTTAATCAACATGCTGATGATCTTAAGACATTGCTTAGCTCCGCCATTACTAATCAGGAGACTTGCCTAGACGGGTTCTCGCACGACGCGTCGGACAAAAGCCTGCGGGACAAATTAAAAGAGGGCCAAACAGAAGTGGAGCACATGTGCAGCAATGCATTAGCCATGATTAAAAACATGACGGATACAGACATAGCCAACTACGAGGCCAAAATGGGAATTTCAACCAACAACAACAGAAATCTGAAAGAGGAAAATTGGCCGGAGTGGCTGTCGGCCGGAGACCGTCGGCTGCTGCAGTCGTCATCCGTGACGCCGAACGTGGTAGTGGCGGCGGACGGCACCGGAAATTTCAAGACGGTGGCAGCCGCCGTGGCCGCGGCGCCGGAGAAAAGTAGCAAGAGATATGTGATAAGAATTAAAGCAGGGGTATATAGGGAAAATGTGGAAGTGCCGAAGAAGAAAACGAATATAATGTTTATCGGAGATGGAAGAAGTAACACTATTATTACCGGTAGCCGGAATGTCGTCGACGGCAGCACCACTTTTAACTCTGCAACCGTCGCTGCGGTGGGAGAGGGATTTCTTGCGCGTGACATCACGTTCCAAAACACCGCCGGTCCCTCAAAGCACCAAGCGGTGGCTCTCCGCGTCGGAGCAGATCTCTCCGCCTTCTACCAATGCGACATGTTAGCTTATCAAGACACTCTCTACGTCCATTCCAACCGTCAATTCTACATCAACTGTCTCATCTCCGGCACCGTCGATTTCATCTTCGGCAACGCGGCGGCGGTTTTCCAAGACTGTGACATTCACGCGCGCAAACCCAACTCGGGTCAGAAAAACATGGTCACGGCCCAAGGCCGGTCCGACCCGAACCAAAACACCGGAATCGTGATCCAGAAATCACGGATCGGAGCCACCTCGGATCTCCGCCCGGTTCAGAAGAGCTTTCCGACGTTCCTCGGCCGGCCGTGGAAGGAATATTCTAGAACCGTGATTATGCAGTCGTCGATAAGTGACGTCATTGACCCGAAGGGATGGCATGAGTGGAGCGGTAATTTTGCTCTGAATACTTTGTTTTACGGTGAGTATCAGAATACTGGACCGGGAGCTTCAACCGGCGGGCGGGTGACGTGGAAGGGGTTTAGGGTAATTCAGAGTGCCACGGAGGCTGAAGGTTTTACTGCGGGTAAATTTATTGGCGGTGGGAGTTGGTTGCGGTCTACCGGTTTTCCTTTCTCTCTAGGATTATGA 1779 51.32 MKETHNTMETPIAAGIPNSGHHHHQPPKKPNKKKLLILALSSTLLLVGAVAGIVAGVTNSQNSGDRSNSGAHAILKSTCSSTLYPDLCFSTISESKEFATKKVANQKDVIELSINITLKAVEENYFKVQKLAALKNITHREKIALHDCLETIDETLDELHKAIADLHQYPNKKSLNQHADDLKTLLSSAITNQETCLDGFSHDASDKSLRDKLKEGQTEVEHMCSNALAMIKNMTDTDIANYEAKMGISTNNNRNLKEENWPEWLSAGDRRLLQSSSVTPNVVVAADGTGNFKTVAAAVAAAPEKSSKRYVIRIKAGVYRENVEVPKKKTNIMFIGDGRSNTIITGSRNVVDGSTTFNSATVAAVGEGFLARDITFQNTAGPSKHQAVALRVGADLSAFYQCDMLAYQDTLYVHSNRQFYINCLISGTVDFIFGNAAAVFQDCDIHARKPNSGQKNMVTAQGRSDPNQNTGIVIQKSRIGATSDLRPVQKSFPTFLGRPWKEYSRTVIMQSSISDVIDPKGWHEWSGNFALNTLFYGEYQNTGPGASTGGRVTWKGFRVIQSATEAEGFTAGKFIGGGSWLRSTGFPFSLGL 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 70466893 70472551 + Hsped.03g13830.1 Hepe03g1383 566381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1383 592 ProSitePatterns Pectinesterase signature 2. 425 434 IPR033131 -
Hepe03g1383 592 MobiDBLite consensus disorder prediction 1 31 - -
Hepe03g1383 592 Coils Coil 239 259 - -
Hepe03g1383 592 ProSitePatterns Pectinesterase signature 1. 306 325 IPR018040 -
Hepe03g1383 592 Gene3D - 275 592 IPR012334 -
Hepe03g1383 592 Pfam Pectinesterase 281 577 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe03g1383 592 Pfam Plant invertase/pectin methylesterase inhibitor 74 230 IPR006501 GO:0004857(InterPro)
Hepe03g1383 592 CDD PMEI-like_3 77 235 - -
Hepe03g1383 592 SMART PMEI_2 70 230 IPR006501 GO:0004857(InterPro)
Hepe03g1383 592 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 74 235 IPR035513 -
Hepe03g1383 592 Gene3D Invertase/pectin methylesterase inhibitor family protein 72 235 IPR035513 -
Hepe03g1383 592 PANTHER PECTINESTERASE 34 583 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe03g1383 592 FunFam Pectinesterase 275 592 - -
Hepe03g1383 592 FunFam Pectinesterase 71 235 - -
Hepe03g1383 592 NCBIfam pectinesterase inhibitor domain 51 234 IPR006501 GO:0004857(InterPro)
Hepe03g1383 592 SUPERFAMILY Pectin lyase-like 278 591 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1578 Hepe-Chr2:20952047 Hepe03g1383 Hepe-Chr3:70466893 1.82e-264 dispersed
Hepe03g1383 Hepe-Chr3:70466893 Hepe06g1367 Hepe-Chr6:63939918 1.63e-155 dispersed
Hepe10g1874 Hepe-Chr10:55549607 Hepe03g1383 Hepe-Chr3:70466893 9.51e-46 dispersed
Hepe06g0844 Hepe-Chr6:55241602 Hepe03g1383 Hepe-Chr3:70466893 8.68e-143 transposed
Hepe02g1577 Hepe-Chr2:20936185 Hepe03g1383 Hepe-Chr3:70466893 1.49e-126 wgd
Hepe03g1383 Hepe-Chr3:70466893 Hepe09g0960 Hepe-Chr9:9721391 2.23e-13 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1383 K01051 - csv:101212388 967.607