Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1390 ATGGTGTTTCATTCACAAGTTCCTGCTAGATATACTTGTAAGCTTCTTGCAATCCCCTGCTTCCCTGTTCCTGAACATAAAAGTAAGAATGCTTATTCAGAGGATCAGCAGAGATATCCTTTTCCACAATTAACTTCTTCTGGGCGTTTAGAGGTTGAGGTTTTGTCAAATCCTAGTAAAGATGAGTTTTGTAGGACTATTGAATCGTATAAACCGAACATTGTTTATTTACAAGGGGAACAACTTGAGAATGATGAAGTTGGTTCTTTAGTTTGGGGAGGTGTTGATATGTCTACTGTAGAAGCGATAAGCGAGCTCTTTAGTTCTCCGTTGCCGCCCACCACTGTATATTTGGAAATAGCAAATGGAGATGAAGTAGCTGATGCACTTCACTCCAAGGGTATTCCTTATGTCATATATTGGAGAAGCACATTTTCTTGTTATGCAGCATGTCATTTCCGTAATGCATTCCTTTCGGTTCTTCAGAGTTCTTCTGCTCATACGTGGGACGCATTTCAACTTGCATATGCTTCATTTAGGATGTATTGCTCAGGAAACAACCTTGGTCTTCCTATGAGTAGTTATGAAGAAGTTAGTGAAGATCTAGGACCGCATCTTCTAGGGGAACGTTTGAAAATAAATGTTGAACCCCTTGAGAACGAGGCAGAGGATGATGAAGAAAGTTCATTGGAAATTCCTTCTGTGAGTGTACTTGATCGTGATGTTGAAATGAGATTTCTCGTATGTGGAGAACCAGGGTCTTTGGATGCTCACGTGTTAGGAGCTCTGGAGGATGGTCTTAACGCCCTCTTGGACATTGAAATTCGGGGGAGCAAACTTCATGGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTTACCATGCGTTGTGATATATCAACATGCAGTTTTGCGCACGTCTCACTTTTGGTATCGGGCAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTATAGAAAGAGGTGAACTAGTGCAGACACTAATAGATGGTGAAGGAAGCAAACACCTATCTGAGCCACGGAAATCAGTTTCAATTGCTTGTGGGGCAACAGTTTTTGAAGTTAGCATGAAGGTTCCTTCATGGGCATCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTGGGACTCGGCATTGCCAGCATTCAGGGTTTGTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAACGCCTACTTTTCTTCTGTTCAAGGAAGGAAAAAGATTTATTTCCGAGTAATTTAACCGATAGCACACTCCCTAGTTGGTTGAAGCCGCCTGCTCCTAGAAAGAGGTCAAGAAATATGAAAGACACAAGCCTTGGTTCTCATGATGTTATTGAACATCTGAAGGTTTCATCTGGTAGAAGAATAAATGGTGAGAACATGGAAGTAGGATCAAGGAATGGTTTTAGCACTCCCATGTTTCCACTCCCAAGAAGGAGAGGAATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCGCCATAAAATGATATCTTTTCGTGGAATAGCTGAGACAGGTGTGCACTATGGAGGCCTGGTTAAGACTAGTGTTCCTTATATTAATCCCACAAAGCATGTTACTGTAGGATCAGCTTCAGTTTCGCAACAAAAAATGTTTCCAAGTGCATCTCAATATAAACAAATTATTCCCATGAATCCACTACCTTTGAAGAAGCATGGTTGTGGCAGAAGCCATATACAAGCTTGCTTTGAGGAGGATTTTTTGAAGGATTTGCTGCAGTTTCTAGCTTTTCGAGGTCATAATCGACTTATTCCTCCAGGTGGGCTTGCTGAGTTTCCAGATGCAATACTCAATGGAAAGCGTCTTGACCTTTACAACCTATACAAGGAGGTGGTTTCAAGAGGTGGCTTTCGTGTTGGAAATGGCATTAACTGGAAAGGACAGATCTTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACAGGTGTTGGAAACACGCTTAAAAGACATTACGAGACTTATCTTCTCGAGTATGAATTGGCACATGAAGATGTAGATGGCGAATGTTGCCTGTTGTGTCACAGTAGTGCAGCGGGGGATTGGGTGAACTGTGGCATTTGTGGCGAGTGGGCTCACTTTGGTTGTGACAGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTGTTGCTACTTATAAGAAGAAGAAGATTGCAAATGGGTTGCCTCCAGGCTTATCCTCAAGACCAATATGA 2349 41.98 MVFHSQVPARYTCKLLAIPCFPVPEHKSKNAYSEDQQRYPFPQLTSSGRLEVEVLSNPSKDEFCRTIESYKPNIVYLQGEQLENDEVGSLVWGGVDMSTVEAISELFSSPLPPTTVYLEIANGDEVADALHSKGIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQLAYASFRMYCSGNNLGLPMSSYEEVSEDLGPHLLGERLKINVEPLENEAEDDEESSLEIPSVSVLDRDVEMRFLVCGEPGSLDAHVLGALEDGLNALLDIEIRGSKLHGKFSAPPPPLQAGTLSNGVVTMRCDISTCSFAHVSLLVSGSAQACFDDQLFENYIKNEIIERGELVQTLIDGEGSKHLSEPRKSVSIACGATVFEVSMKVPSWASQILRQLAPDVSYRSLVGLGIASIQGLSVASFEKDDAERLLFFCSRKEKDLFPSNLTDSTLPSWLKPPAPRKRSRNMKDTSLGSHDVIEHLKVSSGRRINGENMEVGSRNGFSTPMFPLPRRRGMKIAAMRPIPHVNRHKMISFRGIAETGVHYGGLVKTSVPYINPTKHVTVGSASVSQQKMFPSASQYKQIIPMNPLPLKKHGCGRSHIQACFEEDFLKDLLQFLAFRGHNRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVATYKKKKIANGLPPGLSSRPI 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 70531556 70538587 + Hsped.03g13900.1 Hepe03g1390 566388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1390 782 Gene3D - 594 701 IPR036431 GO:0003677(InterPro)
Hepe03g1390 782 Pfam ARID/BRIGHT DNA binding domain 602 698 IPR001606 GO:0003677(InterPro)
Hepe03g1390 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 764 IPR013083 -
Hepe03g1390 782 SUPERFAMILY ARID-like 601 713 IPR036431 GO:0003677(InterPro)
Hepe03g1390 782 SMART bright_3 599 703 IPR001606 GO:0003677(InterPro)
Hepe03g1390 782 CDD ARID 601 698 - -
Hepe03g1390 782 CDD PHD_ARID4_like 708 759 - -
Hepe03g1390 782 ProSiteProfiles ARID domain profile. 598 702 IPR001606 GO:0003677(InterPro)
Hepe03g1390 782 SUPERFAMILY FYVE/PHD zinc finger 694 762 IPR011011 -
Hepe03g1390 782 SMART ARID_2 595 698 - -
Hepe03g1390 782 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 773 IPR042293 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1390 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1572 Hepe-Chr2:20892132 Hepe03g1390 Hepe-Chr3:70531556 0.0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g26 . Blo06g00765 . Bda10g00889 . Bpe10g00717 Bma10g00669 . . Cmo17g00636 . . . Car14g01069 . Cpe12g00555 . Bhi01g02835 . . . . . . . . . . . . . . . Cone7ag1258 . Lsi02g02861 Csa07g02313 . Cme01g02766 Blo07g00805 . Bda05g00623 . Bpe03g00693 . . . Sed04g2378 Cmo01g00019 . . Cma17g00656 . Car17g00618 . . Bhi09g00271 Tan06g0071 Cmetu01g1064 . Hepe03g1390 . . Cla09g00122 Cam09g0131 Cec09g0134 Cco09g0135 Clacu09g0138 . Cre09g0123 . Csa03g02792 Chy01g02133 Cme04g01382
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe03g0356 . 100 440 ARID Transcription Factor Family AT1G04880 58.7 3.5e-105 379.0
Hepe01g2371 . 135 414 ARID Transcription Factor Family AT1G20910 66.4 4.6e-101 365.2
Hepe06g0848 . 236 502 ARID Transcription Factor Family AT1G20910 60.7 3.7e-90 328.9
Hepe01g2311 . 16 309 ARID Transcription Factor Family AT1G76110 66.8 1.9e-111 399.4
Hepe01g2371 . 134 444 ARID Transcription Factor Family AT1G76510 72.8 3.9e-125 445.3
Hepe06g0848 . 223 532 ARID Transcription Factor Family AT1G76510 62.5 1.3e-109 393.7
Hepe02g1572 . 2 770 ARID Transcription Factor Family AT3G43240 59.0 7.6e-262 900.2
Hepe03g1390 . 2 772 ARID Transcription Factor Family AT3G43240 57.7 1.5e-257 885.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55283 PF01388 ARID 7.70E-15 CL0123 Hepe TR