Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1390 ATGGTGTTTCATTCACAAGTTCCTGCTAGATATACTTGTAAGCTTCTTGCAATCCCCTGCTTCCCTGTTCCTGAACATAAAAGTAAGAATGCTTATTCAGAGGATCAGCAGAGATATCCTTTTCCACAATTAACTTCTTCTGGGCGTTTAGAGGTTGAGGTTTTGTCAAATCCTAGTAAAGATGAGTTTTGTAGGACTATTGAATCGTATAAACCGAACATTGTTTATTTACAAGGGGAACAACTTGAGAATGATGAAGTTGGTTCTTTAGTTTGGGGAGGTGTTGATATGTCTACTGTAGAAGCGATAAGCGAGCTCTTTAGTTCTCCGTTGCCGCCCACCACTGTATATTTGGAAATAGCAAATGGAGATGAAGTAGCTGATGCACTTCACTCCAAGGGTATTCCTTATGTCATATATTGGAGAAGCACATTTTCTTGTTATGCAGCATGTCATTTCCGTAATGCATTCCTTTCGGTTCTTCAGAGTTCTTCTGCTCATACGTGGGACGCATTTCAACTTGCATATGCTTCATTTAGGATGTATTGCTCAGGAAACAACCTTGGTCTTCCTATGAGTAGTTATGAAGAAGTTAGTGAAGATCTAGGACCGCATCTTCTAGGGGAACGTTTGAAAATAAATGTTGAACCCCTTGAGAACGAGGCAGAGGATGATGAAGAAAGTTCATTGGAAATTCCTTCTGTGAGTGTACTTGATCGTGATGTTGAAATGAGATTTCTCGTATGTGGAGAACCAGGGTCTTTGGATGCTCACGTGTTAGGAGCTCTGGAGGATGGTCTTAACGCCCTCTTGGACATTGAAATTCGGGGGAGCAAACTTCATGGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTTACCATGCGTTGTGATATATCAACATGCAGTTTTGCGCACGTCTCACTTTTGGTATCGGGCAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTATAGAAAGAGGTGAACTAGTGCAGACACTAATAGATGGTGAAGGAAGCAAACACCTATCTGAGCCACGGAAATCAGTTTCAATTGCTTGTGGGGCAACAGTTTTTGAAGTTAGCATGAAGGTTCCTTCATGGGCATCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTGGGACTCGGCATTGCCAGCATTCAGGGTTTGTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAACGCCTACTTTTCTTCTGTTCAAGGAAGGAAAAAGATTTATTTCCGAGTAATTTAACCGATAGCACACTCCCTAGTTGGTTGAAGCCGCCTGCTCCTAGAAAGAGGTCAAGAAATATGAAAGACACAAGCCTTGGTTCTCATGATGTTATTGAACATCTGAAGGTTTCATCTGGTAGAAGAATAAATGGTGAGAACATGGAAGTAGGATCAAGGAATGGTTTTAGCACTCCCATGTTTCCACTCCCAAGAAGGAGAGGAATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCGCCATAAAATGATATCTTTTCGTGGAATAGCTGAGACAGGTGTGCACTATGGAGGCCTGGTTAAGACTAGTGTTCCTTATATTAATCCCACAAAGCATGTTACTGTAGGATCAGCTTCAGTTTCGCAACAAAAAATGTTTCCAAGTGCATCTCAATATAAACAAATTATTCCCATGAATCCACTACCTTTGAAGAAGCATGGTTGTGGCAGAAGCCATATACAAGCTTGCTTTGAGGAGGATTTTTTGAAGGATTTGCTGCAGTTTCTAGCTTTTCGAGGTCATAATCGACTTATTCCTCCAGGTGGGCTTGCTGAGTTTCCAGATGCAATACTCAATGGAAAGCGTCTTGACCTTTACAACCTATACAAGGAGGTGGTTTCAAGAGGTGGCTTTCGTGTTGGAAATGGCATTAACTGGAAAGGACAGATCTTCTCAAAGATGCGCAATTACACCATGACCAATAGAATGACAGGTGTTGGAAACACGCTTAAAAGACATTACGAGACTTATCTTCTCGAGTATGAATTGGCACATGAAGATGTAGATGGCGAATGTTGCCTGTTGTGTCACAGTAGTGCAGCGGGGGATTGGGTGAACTGTGGCATTTGTGGCGAGTGGGCTCACTTTGGTTGTGACAGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTGTTGCTACTTATAAGAAGAAGAAGATTGCAAATGGGTTGCCTCCAGGCTTATCCTCAAGACCAATATGA 2349 41.98 MVFHSQVPARYTCKLLAIPCFPVPEHKSKNAYSEDQQRYPFPQLTSSGRLEVEVLSNPSKDEFCRTIESYKPNIVYLQGEQLENDEVGSLVWGGVDMSTVEAISELFSSPLPPTTVYLEIANGDEVADALHSKGIPYVIYWRSTFSCYAACHFRNAFLSVLQSSSAHTWDAFQLAYASFRMYCSGNNLGLPMSSYEEVSEDLGPHLLGERLKINVEPLENEAEDDEESSLEIPSVSVLDRDVEMRFLVCGEPGSLDAHVLGALEDGLNALLDIEIRGSKLHGKFSAPPPPLQAGTLSNGVVTMRCDISTCSFAHVSLLVSGSAQACFDDQLFENYIKNEIIERGELVQTLIDGEGSKHLSEPRKSVSIACGATVFEVSMKVPSWASQILRQLAPDVSYRSLVGLGIASIQGLSVASFEKDDAERLLFFCSRKEKDLFPSNLTDSTLPSWLKPPAPRKRSRNMKDTSLGSHDVIEHLKVSSGRRINGENMEVGSRNGFSTPMFPLPRRRGMKIAAMRPIPHVNRHKMISFRGIAETGVHYGGLVKTSVPYINPTKHVTVGSASVSQQKMFPSASQYKQIIPMNPLPLKKHGCGRSHIQACFEEDFLKDLLQFLAFRGHNRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVATYKKKKIANGLPPGLSSRPI 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 70531556 70538587 + Hsped.03g13900.1 Hepe03g1390 566388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1390 782 Gene3D - 594 701 IPR036431 GO:0003677(InterPro)
Hepe03g1390 782 Pfam ARID/BRIGHT DNA binding domain 602 698 IPR001606 GO:0003677(InterPro)
Hepe03g1390 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 702 764 IPR013083 -
Hepe03g1390 782 SUPERFAMILY ARID-like 601 713 IPR036431 GO:0003677(InterPro)
Hepe03g1390 782 SMART bright_3 599 703 IPR001606 GO:0003677(InterPro)
Hepe03g1390 782 CDD ARID 601 698 - -
Hepe03g1390 782 CDD PHD_ARID4_like 708 759 - -
Hepe03g1390 782 ProSiteProfiles ARID domain profile. 598 702 IPR001606 GO:0003677(InterPro)
Hepe03g1390 782 SUPERFAMILY FYVE/PHD zinc finger 694 762 IPR011011 -
Hepe03g1390 782 SMART ARID_2 595 698 - -
Hepe03g1390 782 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 5 773 IPR042293 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g1572 Hepe-Chr2:20892132 Hepe03g1390 Hepe-Chr3:70531556 0.0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55283 PF01388 ARID 7.70E-15 CL0123 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1390 - - - 0.0