Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1442 ATGGATGGAGGTGGCGGAGTGCACAATCGCACAGTGGAAGATGTTTATAGTGATTTCAGGGGCCGAAGAAGTGGCATCATCAAAGCCCTCACCGTAGATGTTGAAGAGTTCTTTCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGATTTCCAAATGAAGCATGGGAAGTTAATTTACCGGCTGAAGAAGTACCTCCAGAACTCCCAGAGCCGGCGTTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCTTTGGTTGCTGTCCATAGCGATTCATGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAGAGCTGATAGGAGACGGCTTTTTAATATGGTAAATGAATTGCCAACTGTATTTGAAGTAGTCACAGGTATTGCAAAGAAACCAGTCAAGGAAAAGTCATCAAGTGCTAATGGTAGCAGAACCAAGTCGAACTTTAAAACGCTGGAAGCCGAAACTCCAGGGATGTATGCGAGGCAGCAGCCGCCGCAGGCAAGGGAAGAAGTAGAGGCCTTGTATGAAGAAGACGAAGACGAGCACGGTGACACCTTGTGCGGGGCATGTGGTGAGAATTATGCATCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAGTGGTTCCATGGAAAATGTGTTAGAATAACCCCTGCTAAAGCAGAGCACATTAAGCAGTACAAATGCCCATCCTGCAGCAACAACAAGAGAGGCCGCATTTAA 765 45.23 MDGGGGVHNRTVEDVYSDFRGRRSGIIKALTVDVEEFFQQCDPEKENLCLYGFPNEAWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDRADRRRLFNMVNELPTVFEVVTGIAKKPVKEKSSSANGSRTKSNFKTLEAETPGMYARQQPPQAREEVEALYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIKQYKCPSCSNNKRGRI 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 71188956 71191921 + Hsped.03g14420.1 Hepe03g1442 566440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1442 254 SUPERFAMILY FYVE/PHD zinc finger 189 250 IPR011011 -
Hepe03g1442 254 ProSiteProfiles Zinc finger PHD-type profile. 197 249 IPR019787 -
Hepe03g1442 254 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Hepe03g1442 254 Pfam PHD-finger 200 246 IPR019787 -
Hepe03g1442 254 CDD PHD_AL_plant 199 249 IPR044104 -
Hepe03g1442 254 FunFam PHD finger alfin-like protein 192 248 - -
Hepe03g1442 254 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 190 248 IPR013083 -
Hepe03g1442 254 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Hepe03g1442 254 ProSitePatterns Zinc finger PHD-type signature. 200 246 IPR019786 -
Hepe03g1442 254 SMART PHD_3 199 247 IPR001965 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1442 Hepe-Chr3:71188956 Hepe07g0556 Hepe-Chr7:5941507 2.00e-115 dispersed
Hepe03g1442 Hepe-Chr3:71188956 Hepe08g1423 Hepe-Chr8:16817032 4.93e-134 wgd
Hepe03g1442 Hepe-Chr3:71188956 Hepe08g2683 Hepe-Chr8:68852467 2.35e-131 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55289 PF12165 Alfin 2.90E-67 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1442 K26274 - csv:101222322 457.603