Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe03g1451 | ATGGCAGGTTCAGCTCCTGAAGGATCCCAATTTGATTCTCGCCAATTTGATGCTAAAATGAATGAGATTCTTTCAGCAGAAGGGCAGGAATTTTTTACCTCATATGATGAAGTTTATGAAAGTTTTGATGCAATGGGGCTGCAAGAGAACCTTCTTAGGGGCATTTATGCCTATGGTTTTGAGAAGCCGTCTGCAATTCAGCAAAGGGGTATTGTTCCCTTCTGCAAAGGCCTTGATGTGATTCAACAGGCTCAGTCTGGAACTGGCAAGACTGCAACTTTCTGCTCTGGGATACTGCAACAACTTGATTATGGTCTTGTCCAGTGTCAGTCTTTAGTTTTGGCACCGACTAGGGAGCTTGCTCAACAAATTGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTTAAGGTTCATGCGTGTGTGGGAGGGACAAGCGTTCGTGAGGATCAACGCATTCTTCAAGCTGGTGTTCATGTTGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTAAGGAGGCAGTCTCTTCGCCCAGATTCTATTAAGATGTTTGTATTGGATGAAGCCGATGAAATGCTTTCTCGTGGTTTTAAAGATCAGATCTATGACATTTTCCAGCTGTTGCCATCAAAAATTCAAGTTGGGGTATTCTCTGCCACAATGCCGCCTGAAGCTTTGGAGATCACTAGGAAGTTCATGAACAAGCCAGTTAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAACAATTTTACGTTAATGTTGACAAGGAAGATTGGAAGCTCGAAACTCTTTGTGATCTCTACGAGACTCTGGCCATCACTCAAAGTGTCATCTTTGTCAACACACGTCGCAAGGTCGATTGGCTTACAGACAAGATGAGGAGCCGAGACCATACCGTATCTGCCACCCACGGTGACATGGACCAGAACACTCGAGATATAATCATGCGTGAATTTCGGTCTGGCTCTTCTCGTGTTCTTATCACAACTGACTTGTTGGCTCGTGGTATTGATGTTCAGCAAGTCTCCCTTGTCATAAACTTTGATTTGCCAACCCAACCAGAAAATTACCTTCATCGTATTGGTCGAAGTGGGCGTTTTGGAAGAAAGGGTGTTGCCATCAATTTTGTTACAACTGATGATGAGAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTTGTCATCGAGGAGCTGCCAGCTAACGTTGCCGATCTCCTATGA | 1242 | 43.64 | MAGSAPEGSQFDSRQFDAKMNEILSAEGQEFFTSYDEVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNVVIEELPANVADLL | 413 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 71286046 | 71288823 | + | Hsped.03g14510.1 | Hepe03g1451 | 566449 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe03g1451 | 413 | SMART | helicmild6 | 293 | 374 | IPR001650 | - | |
Hepe03g1451 | 413 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 37 | 399 | - | GO:0003723(PANTHER)|GO:0003724(PANTHER) | |
Hepe03g1451 | 413 | Pfam | DEAD/DEAH box helicase | 65 | 227 | IPR011545 | GO:0003676(InterPro)|GO:0005524(InterPro) | |
Hepe03g1451 | 413 | FunFam | Eukaryotic initiation factor 4A-III | 248 | 413 | - | - | |
Hepe03g1451 | 413 | CDD | DEADc_EIF4A | 44 | 242 | - | - | |
Hepe03g1451 | 413 | Gene3D | - | 249 | 413 | IPR027417 | - | |
Hepe03g1451 | 413 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 71 | 241 | IPR014001 | - | |
Hepe03g1451 | 413 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 187 | 195 | IPR000629 | - | |
Hepe03g1451 | 413 | SMART | ultradead3 | 59 | 256 | IPR014001 | - | |
Hepe03g1451 | 413 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 40 | 68 | IPR014014 | GO:0003724(InterPro) | |
Hepe03g1451 | 413 | Pfam | Helicase conserved C-terminal domain | 266 | 374 | IPR001650 | - | |
Hepe03g1451 | 413 | CDD | SF2_C_DEAD | 253 | 383 | - | - | |
Hepe03g1451 | 413 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 252 | 413 | IPR001650 | - | |
Hepe03g1451 | 413 | FunFam | Eukaryotic initiation factor 4A-II | 28 | 247 | - | - | |
Hepe03g1451 | 413 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 109 | 394 | IPR027417 | - | |
Hepe03g1451 | 413 | Gene3D | - | 30 | 248 | IPR027417 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe03g1451 | Hepe-Chr3:71286046 | Hepe05g1935 | Hepe-Chr5:69665207 | 1.81e-87 | dispersed | |
Hepe05g0315 | Hepe-Chr5:3901931 | Hepe03g1451 | Hepe-Chr3:71286046 | 6.51e-63 | transposed | |
Hepe02g1516 | Hepe-Chr2:19799132 | Hepe03g1451 | Hepe-Chr3:71286046 | 1.37e-293 | wgd | |
Hepe03g1451 | Hepe-Chr3:71286046 | Hepe08g1404 | Hepe-Chr8:16548923 | 1.21e-287 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe03g1451 | K03257 | - | csv:101221456 | 803.897 |