Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1451 ATGGCAGGTTCAGCTCCTGAAGGATCCCAATTTGATTCTCGCCAATTTGATGCTAAAATGAATGAGATTCTTTCAGCAGAAGGGCAGGAATTTTTTACCTCATATGATGAAGTTTATGAAAGTTTTGATGCAATGGGGCTGCAAGAGAACCTTCTTAGGGGCATTTATGCCTATGGTTTTGAGAAGCCGTCTGCAATTCAGCAAAGGGGTATTGTTCCCTTCTGCAAAGGCCTTGATGTGATTCAACAGGCTCAGTCTGGAACTGGCAAGACTGCAACTTTCTGCTCTGGGATACTGCAACAACTTGATTATGGTCTTGTCCAGTGTCAGTCTTTAGTTTTGGCACCGACTAGGGAGCTTGCTCAACAAATTGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTTAAGGTTCATGCGTGTGTGGGAGGGACAAGCGTTCGTGAGGATCAACGCATTCTTCAAGCTGGTGTTCATGTTGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTAAGGAGGCAGTCTCTTCGCCCAGATTCTATTAAGATGTTTGTATTGGATGAAGCCGATGAAATGCTTTCTCGTGGTTTTAAAGATCAGATCTATGACATTTTCCAGCTGTTGCCATCAAAAATTCAAGTTGGGGTATTCTCTGCCACAATGCCGCCTGAAGCTTTGGAGATCACTAGGAAGTTCATGAACAAGCCAGTTAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAACAATTTTACGTTAATGTTGACAAGGAAGATTGGAAGCTCGAAACTCTTTGTGATCTCTACGAGACTCTGGCCATCACTCAAAGTGTCATCTTTGTCAACACACGTCGCAAGGTCGATTGGCTTACAGACAAGATGAGGAGCCGAGACCATACCGTATCTGCCACCCACGGTGACATGGACCAGAACACTCGAGATATAATCATGCGTGAATTTCGGTCTGGCTCTTCTCGTGTTCTTATCACAACTGACTTGTTGGCTCGTGGTATTGATGTTCAGCAAGTCTCCCTTGTCATAAACTTTGATTTGCCAACCCAACCAGAAAATTACCTTCATCGTATTGGTCGAAGTGGGCGTTTTGGAAGAAAGGGTGTTGCCATCAATTTTGTTACAACTGATGATGAGAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTTGTCATCGAGGAGCTGCCAGCTAACGTTGCCGATCTCCTATGA 1242 43.64 MAGSAPEGSQFDSRQFDAKMNEILSAEGQEFFTSYDEVYESFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQSLVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDSIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGVAINFVTTDDERMLFDIQKFYNVVIEELPANVADLL 413
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 71286046 71288823 + Hsped.03g14510.1 Hepe03g1451 566449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1451 413 SMART helicmild6 293 374 IPR001650 -
Hepe03g1451 413 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 37 399 - GO:0003723(PANTHER)|GO:0003724(PANTHER)
Hepe03g1451 413 Pfam DEAD/DEAH box helicase 65 227 IPR011545 GO:0003676(InterPro)|GO:0005524(InterPro)
Hepe03g1451 413 FunFam Eukaryotic initiation factor 4A-III 248 413 - -
Hepe03g1451 413 CDD DEADc_EIF4A 44 242 - -
Hepe03g1451 413 Gene3D - 249 413 IPR027417 -
Hepe03g1451 413 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Hepe03g1451 413 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Hepe03g1451 413 SMART ultradead3 59 256 IPR014001 -
Hepe03g1451 413 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724(InterPro)
Hepe03g1451 413 Pfam Helicase conserved C-terminal domain 266 374 IPR001650 -
Hepe03g1451 413 CDD SF2_C_DEAD 253 383 - -
Hepe03g1451 413 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 413 IPR001650 -
Hepe03g1451 413 FunFam Eukaryotic initiation factor 4A-II 28 247 - -
Hepe03g1451 413 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 394 IPR027417 -
Hepe03g1451 413 Gene3D - 30 248 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1451 Hepe-Chr3:71286046 Hepe05g1935 Hepe-Chr5:69665207 1.81e-87 dispersed
Hepe05g0315 Hepe-Chr5:3901931 Hepe03g1451 Hepe-Chr3:71286046 6.51e-63 transposed
Hepe02g1516 Hepe-Chr2:19799132 Hepe03g1451 Hepe-Chr3:71286046 1.37e-293 wgd
Hepe03g1451 Hepe-Chr3:71286046 Hepe08g1404 Hepe-Chr8:16548923 1.21e-287 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1451 K03257 - csv:101221456 803.897