Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe03g1458 | ATGATGATGAAAGGTAATTTTTTGTCTCAACAACAACAAAACCAACAACAAGTAGTCATGGAGGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTGCTACTGCTAGTGTTTCTTCTGCCAATATAACTGATTTCCCTAATCAATATTTTTCTCCTCAAACTACAACCCAACCACCACCTCCTCCTCCTAAGAAGAAGCGGAATCTCCCCGGAAATCCCGACCCAGATTCAGAAGTGACAGCGTTATCGCCGAAAACACTAATGGCGACGAATCGATTCGTGTGCGAGATCTGCAACAAGGGGTTTCAAAGAGATCAAAATCTTCAATTACATAGAAGAGGGCACAATCTACCATGGAAGTTGAAGCAAAGATCAAACAAAGATGTGATAAAGAAGAAGGTATATGTTTGTCCAGAGCCCAGCTGTGTTCACCATGACCCATCAAGAGCTCTTGGAGACCTCACAGGAATCAAAAAGCACTTCTGCAGAAAGCACGGTGAAAAGAAGTGGAAATGTGATAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGATCTGTGGCACAAAGGAGTACAGATGTGACTGTGGAACTCTCTTTTCAAGGAGAGATAGTTTCATTACACATAGAGCCTTTTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCCATGGCAATAAACCCTCTTCTCTCATCTTACAACAACAATAATAATTCACAAGAATTCTCCAATAATAACAATAATATTTTCTCTCTCAAACGAGACTTCGACGACAACGACGACAACAACAACAATAATTTGAGAGCGGAAATCCCACCGTGGCTACAACCTAATTCAGATCTCCGAGGAGAAATCTTCGGGAGCGGCCACAACCAGCATCATCAACATCAGCATCAACATCAACATCAAACCCTAAACCCGAACCCTAGCGGAGTCGGGTGTGGGCCAAGTAGTAGTAGCCTTCCTCCTCCTTATCAAAGCACTTCTCTTTCATCTCCTCATATTTCAGCCACAGCACTGCTGCAGAAGGCAGCCCAAATGGGTGCGACGATGAGTACTACCACTACCACGAGTGGCTCTTTGCCAAGGCCCCACAAAATGCTTCACGTGTCTACAGGAAATTTTGGGCAGATAGGTTTAAGCTCACGTGAAGGTGAAATGAGAAGAGGAGGAGGAGGGGCCGTCAGTTGTAGTAGTAGTAGTTGTACTGATTATGGGAATAAAGCTGCTGCTGTTTCTGCTTCTGCTTCTGCTACTGCTTCTGCACCAAGCACTTTTCTTCATGACATGATAAATTCCCTCTCTTCTGCTTCTCATCCCTTCCTCCAAGATTCTTCCTTTCCGGACGCTGCCGCTTTCGCCGCTATGCATCATCACACCGCCACCGCCACCGCCGCCAACGTCGCCGCTACGGGCGGTCAAAGAAGCGACGGTTTAACGAGAGATTTCTTGGGTCTTCGCCCTCTCTCCCATGGAGATATTCTAAGCATTGCTGGTTTTGGAAACTGCATTGTTCCAAATTCCTCCAATCTTCAAAGCCAAATTCAGAAGCCGTGGCAGGGTTAG | 1590 | 45.16 | MMMKGNFLSQQQQNQQQVVMEENLSNLTSASGEAATASVSSANITDFPNQYFSPQTTTQPPPPPPKKKRNLPGNPDPDSEVTALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDVIKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMAINPLLSSYNNNNNSQEFSNNNNNIFSLKRDFDDNDDNNNNNLRAEIPPWLQPNSDLRGEIFGSGHNQHHQHQHQHQHQTLNPNPSGVGCGPSSSSLPPPYQSTSLSSPHISATALLQKAAQMGATMSTTTTTSGSLPRPHKMLHVSTGNFGQIGLSSREGEMRRGGGGAVSCSSSSCTDYGNKAAAVSASASATASAPSTFLHDMINSLSSASHPFLQDSSFPDAAAFAAMHHHTATATAANVAATGGQRSDGLTRDFLGLRPLSHGDILSIAGFGNCIVPNSSNLQSQIQKPWQG | 529 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 71360079 | 71364189 | + | Hsped.03g14580.1 | Hepe03g1458 | 566456 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe03g1458 | 529 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 97 | 117 | IPR013087 | - | |
Hepe03g1458 | 529 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 150 | 229 | - | - | |
Hepe03g1458 | 529 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 133 | 167 | - | - | |
Hepe03g1458 | 529 | SUPERFAMILY | beta-beta-alpha zinc fingers | 94 | 192 | IPR036236 | - | |
Hepe03g1458 | 529 | MobiDBLite | consensus disorder prediction | 261 | 341 | - | - | |
Hepe03g1458 | 529 | FunFam | protein indeterminate-domain 12-like | 74 | 143 | - | - | |
Hepe03g1458 | 529 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 171 | 195 | - | - | |
Hepe03g1458 | 529 | Gene3D | Classic Zinc Finger | 150 | 229 | - | - | |
Hepe03g1458 | 529 | MobiDBLite | consensus disorder prediction | 55 | 70 | - | - | |
Hepe03g1458 | 529 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 55 | 496 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Hepe03g1458 | 529 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 95 | 117 | IPR013087 | - | |
Hepe03g1458 | 529 | MobiDBLite | consensus disorder prediction | 1 | 81 | - | - | |
Hepe03g1458 | 529 | MobiDBLite | consensus disorder prediction | 1 | 54 | - | - | |
Hepe03g1458 | 529 | MobiDBLite | consensus disorder prediction | 309 | 341 | - | - | |
Hepe03g1458 | 529 | Gene3D | Classic Zinc Finger | 74 | 143 | - | - | |
Hepe03g1458 | 529 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 198 | 232 | - | - | |
Hepe03g1458 | 529 | SMART | c2h2final6 | 95 | 117 | IPR013087 | - | |
Hepe03g1458 | 529 | SMART | c2h2final6 | 137 | 167 | IPR013087 | - | |
Hepe03g1458 | 529 | SMART | c2h2final6 | 172 | 192 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe03g1458 | Hepe-Chr3:71360079 | Hepe04g1495 | Hepe-Chr4:70566490 | 9.98e-105 | dispersed | |
Hepe01g1888 | Hepe-Chr1:83724621 | Hepe03g1458 | Hepe-Chr3:71360079 | 9.00e-102 | wgd | |
Hepe02g1503 | Hepe-Chr2:19588767 | Hepe03g1458 | Hepe-Chr3:71360079 | 2.53e-127 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55290 | None | None | None | None | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe03g1458 | K25870 | - | csv:101220200 | 649.047 |