Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1458 ATGATGATGAAAGGTAATTTTTTGTCTCAACAACAACAAAACCAACAACAAGTAGTCATGGAGGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTGCTACTGCTAGTGTTTCTTCTGCCAATATAACTGATTTCCCTAATCAATATTTTTCTCCTCAAACTACAACCCAACCACCACCTCCTCCTCCTAAGAAGAAGCGGAATCTCCCCGGAAATCCCGACCCAGATTCAGAAGTGACAGCGTTATCGCCGAAAACACTAATGGCGACGAATCGATTCGTGTGCGAGATCTGCAACAAGGGGTTTCAAAGAGATCAAAATCTTCAATTACATAGAAGAGGGCACAATCTACCATGGAAGTTGAAGCAAAGATCAAACAAAGATGTGATAAAGAAGAAGGTATATGTTTGTCCAGAGCCCAGCTGTGTTCACCATGACCCATCAAGAGCTCTTGGAGACCTCACAGGAATCAAAAAGCACTTCTGCAGAAAGCACGGTGAAAAGAAGTGGAAATGTGATAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGATCTGTGGCACAAAGGAGTACAGATGTGACTGTGGAACTCTCTTTTCAAGGAGAGATAGTTTCATTACACATAGAGCCTTTTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCCATGGCAATAAACCCTCTTCTCTCATCTTACAACAACAATAATAATTCACAAGAATTCTCCAATAATAACAATAATATTTTCTCTCTCAAACGAGACTTCGACGACAACGACGACAACAACAACAATAATTTGAGAGCGGAAATCCCACCGTGGCTACAACCTAATTCAGATCTCCGAGGAGAAATCTTCGGGAGCGGCCACAACCAGCATCATCAACATCAGCATCAACATCAACATCAAACCCTAAACCCGAACCCTAGCGGAGTCGGGTGTGGGCCAAGTAGTAGTAGCCTTCCTCCTCCTTATCAAAGCACTTCTCTTTCATCTCCTCATATTTCAGCCACAGCACTGCTGCAGAAGGCAGCCCAAATGGGTGCGACGATGAGTACTACCACTACCACGAGTGGCTCTTTGCCAAGGCCCCACAAAATGCTTCACGTGTCTACAGGAAATTTTGGGCAGATAGGTTTAAGCTCACGTGAAGGTGAAATGAGAAGAGGAGGAGGAGGGGCCGTCAGTTGTAGTAGTAGTAGTTGTACTGATTATGGGAATAAAGCTGCTGCTGTTTCTGCTTCTGCTTCTGCTACTGCTTCTGCACCAAGCACTTTTCTTCATGACATGATAAATTCCCTCTCTTCTGCTTCTCATCCCTTCCTCCAAGATTCTTCCTTTCCGGACGCTGCCGCTTTCGCCGCTATGCATCATCACACCGCCACCGCCACCGCCGCCAACGTCGCCGCTACGGGCGGTCAAAGAAGCGACGGTTTAACGAGAGATTTCTTGGGTCTTCGCCCTCTCTCCCATGGAGATATTCTAAGCATTGCTGGTTTTGGAAACTGCATTGTTCCAAATTCCTCCAATCTTCAAAGCCAAATTCAGAAGCCGTGGCAGGGTTAG 1590 45.16 MMMKGNFLSQQQQNQQQVVMEENLSNLTSASGEAATASVSSANITDFPNQYFSPQTTTQPPPPPPKKKRNLPGNPDPDSEVTALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKDVIKKKVYVCPEPSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMAINPLLSSYNNNNNSQEFSNNNNNIFSLKRDFDDNDDNNNNNLRAEIPPWLQPNSDLRGEIFGSGHNQHHQHQHQHQHQTLNPNPSGVGCGPSSSSLPPPYQSTSLSSPHISATALLQKAAQMGATMSTTTTTSGSLPRPHKMLHVSTGNFGQIGLSSREGEMRRGGGGAVSCSSSSCTDYGNKAAAVSASASATASAPSTFLHDMINSLSSASHPFLQDSSFPDAAAFAAMHHHTATATAANVAATGGQRSDGLTRDFLGLRPLSHGDILSIAGFGNCIVPNSSNLQSQIQKPWQG 529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 71360079 71364189 + Hsped.03g14580.1 Hepe03g1458 566456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1458 529 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Hepe03g1458 529 FunFam protein indeterminate-domain 5, chloroplastic-like 150 229 - -
Hepe03g1458 529 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 133 167 - -
Hepe03g1458 529 SUPERFAMILY beta-beta-alpha zinc fingers 94 192 IPR036236 -
Hepe03g1458 529 MobiDBLite consensus disorder prediction 261 341 - -
Hepe03g1458 529 FunFam protein indeterminate-domain 12-like 74 143 - -
Hepe03g1458 529 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 171 195 - -
Hepe03g1458 529 Gene3D Classic Zinc Finger 150 229 - -
Hepe03g1458 529 MobiDBLite consensus disorder prediction 55 70 - -
Hepe03g1458 529 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 55 496 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe03g1458 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
Hepe03g1458 529 MobiDBLite consensus disorder prediction 1 81 - -
Hepe03g1458 529 MobiDBLite consensus disorder prediction 1 54 - -
Hepe03g1458 529 MobiDBLite consensus disorder prediction 309 341 - -
Hepe03g1458 529 Gene3D Classic Zinc Finger 74 143 - -
Hepe03g1458 529 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 198 232 - -
Hepe03g1458 529 SMART c2h2final6 95 117 IPR013087 -
Hepe03g1458 529 SMART c2h2final6 137 167 IPR013087 -
Hepe03g1458 529 SMART c2h2final6 172 192 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1458 Hepe-Chr3:71360079 Hepe04g1495 Hepe-Chr4:70566490 9.98e-105 dispersed
Hepe01g1888 Hepe-Chr1:83724621 Hepe03g1458 Hepe-Chr3:71360079 9.00e-102 wgd
Hepe02g1503 Hepe-Chr2:19588767 Hepe03g1458 Hepe-Chr3:71360079 2.53e-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55290 None None None None Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1458 K25870 - csv:101220200 649.047