Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1460 ATGAGCACCGTCTCCCACCACCACCACCACCACCTCTCCAAATCCACCACCACCTCCGCCGCCGTCTCAACCACCACCACCACCACCACCACCACTCAAGCCTGCGCCGCCTGCAAGTATCAACGCCGCAAGTGCGCTCCCGATTGCATCCTCGCCCCTTACTTCCCTCACGATCGCCAACGCCAATTCCTCAACGCTCACAAACTCTTCGGCGTTAGCAACATCACCAAGATCATTAAGAATCTCGATCCGTTCGAGAAAGAAGAAGCGATGCGGACGATCATCTTCCAATCCGATGTCCGATCGCTCGATCCCGTCGGTGGATGCTACCGCATCATCCGTGACCTACAGCGCCAGATCGAGTACAGCAAGGCTGAGCTCGAGATTGTGCTTCATCAATTGGCGATCTGTAAGCAGCAGCAGGCCGCCGCTGCGATTCTGGAGGCGGATCCGATGAGTGGATACGGCGGAATTGAGCATCAATTTGTGGAGGGATACGACGGGGAAGGGTTTGTAGTTGGAGAAAATGAAAATGGAGAGAGTTTGGATGAGGAAGTTGAAGTTTGGGGAATTCAGGATTCGGGAATGTCGTCGTGTTCGTCGTTGCAATTGAAACAGGGCGGCGGCGGCTCTGTTCATGATTTTGATGATATCAAAATTGATACTCACCATCACCATCACCATCATCATCAAATTCAACAACAACAGCTTCTTAAGTTTCAACAGGATGATCATGATTTAGTTCATCAGAGTGAAGAAGCTATGCTGAAGATGGACAATGTGATGTTGAAAGAAGACACAGACCCAATACAACAAGCTCAAGAACAAGAGCTTAAAGGCTCAGTAGACACTTTATTTACCTTCCCAATTTGTGATACTTAG 882 49.77 MSTVSHHHHHHLSKSTTTSAAVSTTTTTTTTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSLDPVGGCYRIIRDLQRQIEYSKAELEIVLHQLAICKQQQAAAAILEADPMSGYGGIEHQFVEGYDGEGFVVGENENGESLDEEVEVWGIQDSGMSSCSSLQLKQGGGGSVHDFDDIKIDTHHHHHHHHQIQQQQLLKFQQDDHDLVHQSEEAMLKMDNVMLKEDTDPIQQAQEQELKGSVDTLFTFPICDT 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 71375974 71378251 + Hsped.03g14600.1 Hepe03g1460 566458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1460 293 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 32 241 - -
Hepe03g1460 293 Pfam Lateral organ boundaries (LOB) domain 34 129 IPR004883 -
Hepe03g1460 293 ProSiteProfiles LOB domain profile. 33 134 IPR004883 -
Hepe03g1460 293 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g3147 Hepe-Chr2:80696914 Hepe03g1460 Hepe-Chr3:71375974 3.92e-31 dispersed
Hepe03g1460 Hepe-Chr3:71375974 Hepe08g2048 Hepe-Chr8:57459279 7.21e-29 dispersed
Hepe03g1460 Hepe-Chr3:71375974 Hepe08g1396 Hepe-Chr8:16469963 4.45e-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55291 PF03195 LOB 1.60E-35 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1460 - - - 0.0