Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1500 ATGTGTGCCAATGGAATACCCTTGGAGTGGATTAAATTGTACCAATGCAACTGCTCCAAGAATCATATCCTTGAATCTGTCAGCAAGTGGATTGACAGGGACTTGTCCCAGAATGAGTTGACTGGAGAGCTGCCAGAATTCTTAGCAAATTTGCCAAATTTAAGAGTTCTCATTTTAACCAGAAACAAGTTCACAGGCTCAGTTCCTGAAGTTCTCTTGCAAAGGGCTGAAACTAAATCACTTACATTAAGTATTGATGAAAATCCAGATCTTTGTACATCACTAACATGTGATAACAAGAGGAACAATAACAAGAAGAACAAGTACTTGGTTCTTATAATTCTCTCCAGTATTATAGCTGTGCTCCTACCTATCCTAATGGTTCCTCTAGTAATCTACAAAAGAAAAAAACAAAAAGAGCATCTCAAAAGATCAATCCAAGAAAGGTTACTCGCATCAAAAAATCAACACGTTGGTTACTCTGAGATACTGGTTATAACAGATAACTTGAAAATAACTATAGGAGAAGGAGGATTTGGAAAAGTATATTTGGGTGTACTGAGTGATAAAATTCAAGTTGCTATCAAGTTGCTGTCTGCATCATCACGGCAAGGCTCCAATGAATTCAAAGCAGAGGCTCAAATATTGGCCATTGTTCATCATAGAAATCTGGTTTCTTTCATTGGTTACTGTGATGAGGCTGAGAATAAGGCTCTCATTTATGAATTCATGGCTAATGGAAATCTACGCAAACATCTATCGGATTCAAGCACAAACGTCTTGAGTTGGGTGCAAAGACTCCAAATTGCACTTGATACAGCACAAGGGCTGGAATATTTGCACAATTGTTGCAAGCCACCTATAATTCACAGAGATTTGAAGACTTCAAACATCTTATTGAATGAAAGAATGCAGGCTAAAATATCAGATTTTGGACTCTCCAGGATATTTGCAAATGAAAATGATACTCATTTGGCCACATGCCCTGCTGGCACCTTCGGATATGTCGACCCAACGATCCATTTGTCCGGAAACTTCACCAAGAAAAGTGATGTTTACAGTTTTGGGATTGTCTTATTTGAGCTGATCACTGGAAAGCCTGTCATAATCAAGAGTTCAGACAATAACATCCACATAGTGGATTGGGCAAAGCCTTTGATTCTAGAAGGTAACAGTCAAAGTATTGTGGATCAAAGATTAGAAGGCTTCATAGAAAGTTCTTCAGCAGGAAAATTTATGGAGCTGGCTTTGTCTTGCACACTGTCAACTTCAGCACAAAGGCCTGAAATGAGTGATGTTGTGAAACAACTGATTGAATGTCAAGAAATGGCTCAAAGTCAAAACAGAGTCTCACTTAGGCCACCTAATAATGAGAACTTTTCATATACTTCAATTGGCTCTGATTCAATTTTAAGTCCTAGATAG 1425 38.18 MCANGIPLEWIKLYQCNCSKNHILESVSKWIDRDLSQNELTGELPEFLANLPNLRVLILTRNKFTGSVPEVLLQRAETKSLTLSIDENPDLCTSLTCDNKRNNNKKNKYLVLIILSSIIAVLLPILMVPLVIYKRKKQKEHLKRSIQERLLASKNQHVGYSEILVITDNLKITIGEGGFGKVYLGVLSDKIQVAIKLLSASSRQGSNEFKAEAQILAIVHHRNLVSFIGYCDEAENKALIYEFMANGNLRKHLSDSSTNVLSWVQRLQIALDTAQGLEYLHNCCKPPIIHRDLKTSNILLNERMQAKISDFGLSRIFANENDTHLATCPAGTFGYVDPTIHLSGNFTKKSDVYSFGIVLFELITGKPVIIKSSDNNIHIVDWAKPLILEGNSQSIVDQRLEGFIESSSAGKFMELALSCTLSTSAQRPEMSDVVKQLIECQEMAQSQNRVSLRPPNNENFSYTSIGSDSILSPR 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 71850723 71859042 + Hsped.03g15000.1 Hepe03g1500 566498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1500 474 Gene3D Ribonuclease Inhibitor 7 104 IPR032675 -
Hepe03g1500 474 FunFam receptor-like protein kinase FERONIA 133 243 - -
Hepe03g1500 474 SUPERFAMILY Protein kinase-like (PK-like) 153 437 IPR011009 -
Hepe03g1500 474 SUPERFAMILY L domain-like 34 84 - -
Hepe03g1500 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe03g1500 474 ProSitePatterns Protein kinases ATP-binding region signature. 174 196 IPR017441 GO:0005524(InterPro)
Hepe03g1500 474 Gene3D Transferase(Phosphotransferase) domain 1 245 459 - -
Hepe03g1500 474 Gene3D Phosphorylase Kinase; domain 1 174 244 - -
Hepe03g1500 474 SMART serkin_6 168 444 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g1500 474 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 244 450 - -
Hepe03g1500 474 ProSiteProfiles Protein kinase domain profile. 168 444 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g1500 474 Pfam Protein tyrosine and serine/threonine kinase 171 437 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe03g1500 474 CDD STKc_IRAK 174 439 - -
Hepe03g1500 474 MobiDBLite consensus disorder prediction 448 474 - -
Hepe03g1500 474 PANTHER OS07G0107800 PROTEIN-RELATED 29 446 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1500 Hepe-Chr3:71850723 Hepe10g1553 Hepe-Chr10:52258371 2.53e-74 dispersed
Hepe03g1499 Hepe-Chr3:71842271 Hepe03g1500 Hepe-Chr3:71850723 2.63e-196 tandem
Hepe03g1500 Hepe-Chr3:71850723 Hepe03g1501 Hepe-Chr3:71861458 3.37e-189 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72675 PF07714 PK_Tyr_Ser-Thr 2.20E-49 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1500 - - - 0.0