Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1504 ATGGCATTTAGAGGGCGAGGACGAGGACGAGGTGGCGGGGGGGCCTTTCAGTATGCCAAGCAAGAACCCTTCGAGCTTTTCCCGGAGAATGTCACCCTACCGAGCATCAGTGATGTGCCTGAAGAAAAAAGTTTGGTTATTTTCAACTCCAGGTTGCTGAATTATTGGAAGGCCTCTCCTTTTTTTCTAGAGGAGAATGTCATGAAAAAGATGCAGAAAACCGAGATAGAGAAATTTTCCGATAGATCCAAGTCGAATAGTGCGTTGAAGCGTGATTCCCTCGCACAAATTCTACAGCTCACATCGAGGAACTTTCCTGAAGAATTGGTTGAAGGTTTCAAAGGAAAGTTGCGGAACAAACGAAAAGTTCAATGGAATCCCGCGTCAGGGCTGCAAAAATTGGACTTTCTCGAGAAGCGTGAAGAATCTCTCAAGGGACAGGAGAATGATGGTAAGGAGAAGAAAGAAGGAGAAGAAGGTGAAGACGAAGACGAAGAAGAAGATGCACAGTCCGAAGAACTTACCGATGATGATTATTATCAGAACGAACACTTCGACGATGATGAAGACGATTACAACATGGAAGATGATGGTGCAGAGCAAAAAGCTAATCAACGCAAGAGTTTGAAGAGCAACAAGAAGAAGAAGAAGAAGAAGAAGCGAACCAGAGAGATTTTTCTGAAGCTAATCCAAATCCCAAGCTTGACAATGTCGTGGCAAACATACGTCGATGATCACCTCATGTGCGAGATCGAAGGCAACCATCTCACCTCCGCCGCCATCATCGGCCACGATGCCTCTGTTTGGGCGCAGAGCTCCGCTTTCCCTCAGTTTAAGCCGGATGAGATTTCCGCGATCATGAAGGATTTTGATGAGCCTGGTTCTCTTGCCCCAACTGGTTTACACCTTGGTGGCGTTAAATACATGGTTATCCAGGGAGAGCCTGGAGCTGTTGTTCGTGGCAAGAAGGGATCTGGAGGAATCACTGTGAAGAAAACTGAGAAAGCAGTGATTATTGGACTGTATGATGAACCTTTGACTCCAGGACAATGCAATATGGTTGTTGAAAGGTTGGGAGATTACCTCGTCGAACAGGGCTTGTAG 1104 46.11 MAFRGRGRGRGGGGAFQYAKQEPFELFPENVTLPSISDVPEEKSLVIFNSRLLNYWKASPFFLEENVMKKMQKTEIEKFSDRSKSNSALKRDSLAQILQLTSRNFPEELVEGFKGKLRNKRKVQWNPASGLQKLDFLEKREESLKGQENDGKEKKEGEEGEDEDEEEDAQSEELTDDDYYQNEHFDDDEDDYNMEDDGAEQKANQRKSLKSNKKKKKKKKRTREIFLKLIQIPSLTMSWQTYVDDHLMCEIEGNHLTSAAIIGHDASVWAQSSAFPQFKPDEISAIMKDFDEPGSLAPTGLHLGGVKYMVIQGEPGAVVRGKKGSGGITVKKTEKAVIIGLYDEPLTPGQCNMVVERLGDYLVEQGL 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 71886176 71892636 + Hsped.03g15040.1 Hepe03g1504 566502

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1504 367 FunFam Profilin 237 367 - -
Hepe03g1504 367 PANTHER DNA-DIRECTED RNA POLYMERASE III 1 201 IPR024661 GO:0005666(PANTHER)|GO:0006383(InterPro)
Hepe03g1504 367 Coils Coil 199 219 - -
Hepe03g1504 367 MobiDBLite consensus disorder prediction 157 196 - -
Hepe03g1504 367 SMART prof_2 237 367 IPR005455 GO:0003779(InterPro)
Hepe03g1504 367 CDD PROF 238 366 IPR005455 GO:0003779(InterPro)
Hepe03g1504 367 MobiDBLite consensus disorder prediction 143 217 - -
Hepe03g1504 367 Pfam DNA-directed RNA polymerase III subunit Rpc31 19 195 IPR024661 GO:0006383(InterPro)
Hepe03g1504 367 Pfam Profilin 237 366 IPR048278 GO:0003779(InterPro)
Hepe03g1504 367 Gene3D Dynein light chain 2a, cytoplasmic 236 367 - -
Hepe03g1504 367 SUPERFAMILY Profilin (actin-binding protein) 238 366 IPR036140 -
Hepe03g1504 367 PRINTS Profilin signature 257 266 IPR005455 GO:0003779(InterPro)
Hepe03g1504 367 PRINTS Profilin signature 276 296 IPR005455 GO:0003779(InterPro)
Hepe03g1504 367 PRINTS Profilin signature 349 366 IPR005455 GO:0003779(InterPro)
Hepe03g1504 367 PRINTS Profilin signature 300 314 IPR005455 GO:0003779(InterPro)
Hepe03g1504 367 PRINTS Profilin signature 336 349 IPR005455 GO:0003779(InterPro)
Hepe03g1504 367 PRINTS Profilin signature 239 248 IPR005455 GO:0003779(InterPro)
Hepe03g1504 367 PRINTS Plant profilin signature 340 353 IPR005455 GO:0003779(InterPro)
Hepe03g1504 367 PRINTS Plant profilin signature 307 316 IPR005455 GO:0003779(InterPro)
Hepe03g1504 367 PRINTS Plant profilin signature 263 276 IPR005455 GO:0003779(InterPro)
Hepe03g1504 367 PRINTS Plant profilin signature 353 366 IPR005455 GO:0003779(InterPro)
Hepe03g1504 367 PRINTS Plant profilin signature 320 335 IPR005455 GO:0003779(InterPro)
Hepe03g1504 367 PRINTS Plant profilin signature 288 302 IPR005455 GO:0003779(InterPro)
Hepe03g1504 367 PRINTS Plant profilin signature 237 250 IPR005455 GO:0003779(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1504 K05759 - - csv:101204777 279.256
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1504 Hepe-Chr3:71886176 Hepe08g2631 Hepe-Chr8:68269820 1.25e-74 dispersed
Hepe02g1450 Hepe-Chr2:18595407 Hepe03g1504 Hepe-Chr3:71886176 6.31e-75 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.5e-213 738.0
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT2G37620 96.0 3.3e-213 737.6
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT2G37620 95.2 5.6e-213 736.9
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT2G37620 93.9 4.7e-212 733.8
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT2G37620 94.7 1.1e-197 686.0
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT2G37620 97.4 2.1e-106 382.9
Hepe01g0302 . 2 177 Cytoskeleton Gene Families AT2G37620 92.6 1.7e-92 336.7
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT2G37620 94.5 2.5e-56 216.5
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT2G37620 92.5 5.9e-53 205.3
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 1.2e-212 735.7
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 1.5e-210 728.8
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.4e-210 727.6
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT5G59370 93.4 1.7e-209 725.3
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT5G59370 96.4 5.4e-200 693.7
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT5G59370 98.4 4.1e-107 385.2
Hepe01g0302 . 2 177 Cytoskeleton Gene Families AT5G59370 90.3 6.0e-90 328.2
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT5G59370 92.7 2.8e-55 213.0
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT5G59370 90.7 6.5e-52 201.8
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 5.6e-213 736.9
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT3G46520 95.0 6.9e-211 729.9
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.5e-210 728.8
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT3G46520 93.6 7.6e-210 726.5
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT3G46520 96.1 1.6e-199 692.2
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT3G46520 98.4 4.1e-107 385.2
Hepe01g0302 . 2 177 Cytoskeleton Gene Families AT3G46520 90.9 2.7e-90 329.3
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT3G46520 92.7 2.8e-55 213.0
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT3G46520 90.7 6.5e-52 201.8
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 7.3e-213 736.5
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.6e-213 736.1
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 2.1e-212 734.9
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT3G12110 94.7 3.6e-212 734.2
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT3G12110 95.5 4.6e-199 690.6
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT3G12110 98.9 1.9e-107 386.3
Hepe01g0302 . 2 177 Cytoskeleton Gene Families AT3G12110 92.0 3.8e-92 335.5
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT3G12110 93.6 1.5e-56 217.2
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT3G12110 92.5 2.6e-53 206.5
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT3G18780 93.4 2.2e-209 724.9
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 4.9e-209 723.8
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.4e-208 721.5
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT3G18780 92.0 5.4e-208 720.3
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT3G18780 92.2 3.1e-195 677.9
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT3G18780 93.1 1.2e-103 373.6
Hepe01g0302 . 1 177 Cytoskeleton Gene Families AT3G18780 91.5 1.1e-91 334.0
Hepe04g0054 . 2 110 Cytoskeleton Gene Families AT3G18780 91.7 1.7e-55 213.8
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT3G18780 89.7 1.7e-52 203.8
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT1G49240 93.6 7.6e-210 726.5
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 1.9e-208 721.8
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT1G49240 92.0 5.4e-208 720.3
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT1G49240 92.4 1.1e-195 679.5
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT1G49240 93.7 4.3e-104 375.2
Hepe01g0302 . 1 177 Cytoskeleton Gene Families AT1G49240 91.5 1.1e-91 334.0
Hepe04g0054 . 2 110 Cytoskeleton Gene Families AT1G49240 91.7 1.7e-55 213.8
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT1G49240 89.7 1.7e-52 203.8
Hepe04g1131 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.4e-217 749.6
Hepe08g1258 . 1 377 Cytoskeleton Gene Families AT5G09810 98.1 1.9e-216 748.4
Hepe02g0785 . 1 377 Cytoskeleton Gene Families AT5G09810 95.2 5.6e-213 736.9
Hepe04g0855 . 1 377 Cytoskeleton Gene Families AT5G09810 95.8 3.6e-212 734.2
Hepe01g0800 . 1 357 Cytoskeleton Gene Families AT5G09810 95.0 5.1e-198 687.2
Hepe05g0523 . 87 275 Cytoskeleton Gene Families AT5G09810 98.4 9.2e-107 384.0
Hepe01g0302 . 1 177 Cytoskeleton Gene Families AT5G09810 97.2 1.6e-95 346.7
Hepe04g0054 . 1 110 Cytoskeleton Gene Families AT5G09810 92.7 1.3e-55 214.2
Hepe06g0319 . 1 107 Cytoskeleton Gene Families AT5G09810 90.7 2.9e-52 203.0
Hepe08g2631 . 1 131 Cytoskeleton Gene Families AT2G19760 77.1 6.8e-57 216.9
Hepe03g1504 . 237 367 Cytoskeleton Gene Families AT2G19760 73.3 9.8e-56 213.0
Hepe02g1450 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 4.1e-54 207.6
Hepe03g1504 . 237 367 Cytoskeleton Gene Families AT4G29350 74.8 2.6e-56 214.9
Hepe08g2631 . 1 131 Cytoskeleton Gene Families AT4G29350 76.3 7.5e-56 213.4
Hepe02g1450 . 1 131 Cytoskeleton Gene Families AT4G29350 72.5 4.6e-53 204.1
Hepe03g1504 . 237 367 Cytoskeleton Gene Families AT4G29340 73.9 9.1e-57 216.5
Hepe08g2631 . 1 131 Cytoskeleton Gene Families AT4G29340 71.6 6.5e-55 210.3
Hepe02g1450 . 1 131 Cytoskeleton Gene Families AT4G29340 70.1 1.2e-53 206.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006666 1 7 0 0 1 1 1 1 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 4 4 1 38