Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1505 ATGGGGAAAGCTACCAGATGGCTGAAGGGTCTATTAGGGATGAAAAAGGAGAAAGACCCATCTGGGAATTCAAATTCAAATTCGACCCCCGTCGCCGCCAATAGAAAGGAGAAGAAAAGATGGAGTTTTGCAAAGTCTGGCAGAGATTCCGGTCAAACGCCGCCGCCTGCGGCGGTGGAACCTTCTTGGTTCAGATCATATGTTTCTGATTCGGAGAAAGAGCAGAACAAGCACGCAATTGCGGTGGCTGCAGCTACCGCTGCCGCTGCTGATGCCGCCGTGGCGGCGGCGCAGGCGGCGGTTGCGGTGGTCCGGCTGACGAGTCAAGGAAGAGGGTCTCTGTATATCACTGGAAGAGATAGATGGGCTGCTGTGAAGATTCAAACAGTTTTTAGGGGCTATTTGGCTCGAAAGGCCCTGAGAGCTCTCAAAGGGCTTGTCAAATTGCAGGCTGTGGTTAGGGGATTTCTTGTTAGAAAAAGAGCTGCTGCAACTCTTCATAGTATGCAGGCTCTTTTTAGAGCTCAAACTGCTGTTAGAACTCAAAGAGCTCGTCGATCCTTCAACAAAGAGAATAGGTTTATCCCCGAGATTCGTCCCCGAAAATCTGCGGAAAGGTTTGATGAAACAAGAAGTGAATTCCATAGTAAGAGGTTGTCTATAGCATCATCCTATGAAACCTGCATGAACTCATTGGATGAGAGCCCGAAAATCGTCGAAATCGACACCTACAGAACCCGATCGAGGTCATCTCGTAGGTACATCTCGGCATTGTCCGAATACGTTGGAGATGATGTACCTCTCCAAACAATCTCTTCGCCATTATTGCCATGTCCGTATCGACCTCGCGTGTCTGCACCCCCCGAATGCCACAATTTGGTTCGAGACTTCGAATGGTGCTTGATGGGCGACGACTGCAAGTTCCCTACAGCGCACAGCACGCCTCGCTTATCGAATTCATTCGCCTCCGCCAACGTACCAATCACCCCGTCGAAGAGCGTGTGTGGCGACAGCTTCTTTAGGCCATACATGAACTGCCCGAATTATATGGCGAACACGCAATCATTCAAGGCGAAATTGAGGTCTCAAAGTGCCCCAAAGCAAAGGCCAGAGCCGGGCTCGAAGAAGAAGCTATCATTGAATGAAATGATGGCAGCAAGAAACAGTTTAAGCAGTGTAAGAATGCAAAGACCAAGTAACCAAATGCTGCAAGAAGAAGATGAAGATGAAGAAGAAGAAGAAGAAGAACAAGAAGAAGCACCATATGTTTACTGA 1275 48.78 MGKATRWLKGLLGMKKEKDPSGNSNSNSTPVAANRKEKKRWSFAKSGRDSGQTPPPAAVEPSWFRSYVSDSEKEQNKHAIAVAAATAAAADAAVAAAQAAVAVVRLTSQGRGSLYITGRDRWAAVKIQTVFRGYLARKALRALKGLVKLQAVVRGFLVRKRAAATLHSMQALFRAQTAVRTQRARRSFNKENRFIPEIRPRKSAERFDETRSEFHSKRLSIASSYETCMNSLDESPKIVEIDTYRTRSRSSRRYISALSEYVGDDVPLQTISSPLLPCPYRPRVSAPPECHNLVRDFEWCLMGDDCKFPTAHSTPRLSNSFASANVPITPSKSVCGDSFFRPYMNCPNYMANTQSFKAKLRSQSAPKQRPEPGSKKKLSLNEMMAARNSLSSVRMQRPSNQMLQEEDEDEEEEEEEQEEAPYVY 424
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 71899178 71901550 - Hsped.03g15050.1 Hepe03g1505 566503

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1505 424 PANTHER IQ-DOMAIN 5-RELATED 6 397 - -
Hepe03g1505 424 Pfam IQ calmodulin-binding motif 121 141 IPR000048 GO:0005515(InterPro)
Hepe03g1505 424 Pfam IQ calmodulin-binding motif 147 161 IPR000048 GO:0005515(InterPro)
Hepe03g1505 424 MobiDBLite consensus disorder prediction 358 424 - -
Hepe03g1505 424 MobiDBLite consensus disorder prediction 384 400 - -
Hepe03g1505 424 Gene3D - 62 146 - -
Hepe03g1505 424 ProSiteProfiles IQ motif profile. 120 148 - -
Hepe03g1505 424 SMART iq_5 142 163 IPR000048 GO:0005515(InterPro)
Hepe03g1505 424 SMART iq_5 119 141 IPR000048 GO:0005515(InterPro)
Hepe03g1505 424 Coils Coil 399 420 - -
Hepe03g1505 424 MobiDBLite consensus disorder prediction 1 59 - -
Hepe03g1505 424 ProSiteProfiles Zinc finger C3H1-type profile. 285 315 IPR000571 GO:0046872(InterPro)
Hepe03g1505 424 Pfam Protein of unknown function (DUF4005) 315 397 IPR025064 -
Hepe03g1505 424 ProSiteProfiles IQ motif profile. 144 171 - -
Hepe03g1505 424 MobiDBLite consensus disorder prediction 404 424 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1505 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g0219 Hepe-Chr3:2774671 Hepe03g1505 Hepe-Chr3:71899178 1.60e-19 dispersed
Hepe03g1505 Hepe-Chr3:71899178 Hepe05g1582 Hepe-Chr5:65441882 1.18e-26 dispersed
Hepe02g1447 Hepe-Chr2:18573637 Hepe03g1505 Hepe-Chr3:71899178 2.11e-80 wgd
Hepe03g1505 Hepe-Chr3:71899178 Hepe09g0820 Hepe-Chr9:8029246 3.64e-99 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g2982 . 1 480 IQD Protein Family AT3G52290 53.7 2.4e-103 372.9
Hepe09g1233 . 1 396 IQD Protein Family AT3G22190 58.0 3.7e-96 349.0
Hepe01g1892 . 1 440 IQD Protein Family AT2G26180 60.2 1.4e-119 426.8
Hepe04g1898 . 1 279 IQD Protein Family AT2G33990 52.6 1.4e-64 243.4
Hepe07g0994 . 40 215 IQD Protein Family AT2G33990 54.7 8.0e-49 191.0
Hepe07g0994 . 21 230 IQD Protein Family AT3G15050 56.1 1.0e-56 217.2
Hepe02g2513 . 120 472 IQD Protein Family AT5G13460 50.8 5.4e-74 275.4
Hepe03g1505 . 1 398 IQD Protein Family AT3G16490 51.5 4.2e-70 262.3
Hepe09g0820 . 1 396 IQD Protein Family AT3G16490 51.8 1.6e-69 260.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004070 3 1 3 2 3 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 2 1 1 1 1 1 2 1 0 44