Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1517 ATGGCTATGTCCTGCAAGGATGGTAACAAACATGCTATCGACAACGGCAAGTACGTTCGGTACACACCGGAGCAGGTTGAAGCCCTTGAGCGGCTCTATCACGAATGTCCAAAACCCAGTTCCATTCGTCGCCAGCAGCTTATCAGAGAGTGCCCCATTCTCTCTCACATCGAGCCTAAGCAAATCAAAGTCTGGTTTCAAAACAGAAGATGTCGTGAAAAACAGAGGAAAGAGGCGTCGCGGCTACAAGCTGTGAACAGGAAGCTTACGGCCATGAATAAGCTTTTAATGGAGGAGAATGATAGGTTGCAGAAGCAGGTTTCGCATCTGGTGTATGAAAATGGCTATTTTCGCCAGCATACTCAGAGTACGACGCTTGGAGCTAAAGATACAAGTTGTGAACCGGTGGTAACTAGCGGTCAACACAATTTGACATCCCAGCATCCTCCGAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCTACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGTGTGGCTGCACGTGCCTGCGGCCTGGTGGGTCTAGAACCTACTAGAGTTGCTGAAATCCTCAAGGATAAGCCATCGTGGTTTCGCGATTGCCGAGCTGTGGATGTTCTAAATGTGCTGCCAACCGCCAATGGGGGAACCATTGAGCTGCTTTATATGCAGCTCTATGCGCCTACAACATTGGCGCCTGCACGGGACTTCTGGTTGTTGCGCTACACTTCTGTTTTGGAAGATGGTAGCCTTGTGATTTGTGAGAGATCACTAAAGAACACTCAGAATGGTCCCACCATGCCTCCAGTGCAGCATTTTGTTAGAGCAGAGATGCTGCCGAGTGGATATCTGATAAGACCATGTGAAGGAGGTGGTTCTATCATTCATATTGTTGATCATATGGATCTGGAGCCGTGGAGCGTTCCAGAAGTATTGCGTCCGTTGTACGAATCATCCACTGTTCTTGCTCAAAAGATGACTATGGCGGCTCTACGCCAGTTGAGGCAGATAGCTCACGAAGTTTCACAGTCGAATGTAACAGGCTGGGGTAGACGTCCTGCAGCCTTACGTGCACTTAGTCAAAGGCTAACCCGGGGTTTTAATGAGGCACTTAATGGATTTAATGACGAAGGGTGGTCTGTGATGGGAAATGATGGCATGGATGATGTAACTATTCTTGTAAATTCGTCTCCTGACAAGCTAATGGGATTGAACATTTCATTTGCAAATGGATTTTCTGCCATCAGTAATGCAGTTTTATGTGCTAAAGCATCAATGCTGTTGCAGAATGTGCCTCCTGCTATTCTACTGAGGTTCCTGCGGGAGCACAGGTCAGAATGGGCCGACAACAACATTGATGCTTATTCAGCTGCGGCTGTTAAGGTTGGCCCATGGAGCTTACCAGGGTCCAGAGTTGGAAGTTTTGGGAATCAAGTAATACTTCCACTGGCTCATACCATTGAGCACGAAGAATTTCTAGAAGTGATTAAACTGGAAGGCGTTGGCCATACTCCTGAAGAAGCAATGATGCCTAGAGAAATGTTTCTTCTGCAACTCTGCAGTGGAATGGATGAAAACGCCATTGGCACATGTGCTGAACTAATATTTGCTCCAATCGATGCCTCTTTTGCTGATGATGCGCCTCTTTTACCCTCGGGGTTTCGGATCATACCACTTGATTCTGGAAAGGAAGCATCCAGCCCAAACCGCACACTTGACCTTGCTTCTGCTCTTGAAATTGGGCCTGCTGGAAATAGAGCACCAAACGACTCTGTAAATTCTGGTTGTACAAGGTCTGTAATGACGATTGCATTTGAATTTGCATTTGAGAGCCATATGCAAGAACATGTGGCATCAATGGCTCGACAATATGTTCGTAGTATTATATCATCAGTCCAGAGGGTTGCATTAGCTCTCTCACCTTCTCATTTAAGTTCACATGGCGGACTACGATCTCCTCTTGGTACTCCTGAGGCACAAACACTTGCTCGTTGGATCTGCAACAGTTACAGGTGCTACTTGGGGGTGGAGCTGTTAAAATCTGGAAACGAAGGAGGGGGAGAGCTTGTCCTGAAAACATTATGGCATCACTCGGATGCAATCATGTGCTGCTCTCTAAAGGCATTGCCAGTGTTCACCTTTGCAAATCAGGCAGGCCTCGACATGCTCGAGACAACCTTAGTTGCACTACAAGACATAACTTTGGAAAAGATATTCGATGACCATGGAAAAAAGACACTCTGCTCAGAATTTCCACAGATCATGCAACAGGGGTTTGCTTGTCTTCAAGGAGGCATATGCCTATCGAGCATGGGCCGACCTGTCTCGTATGAAAGAGCTGTGGCTTGGAAGGTGCTGAATGAGGAGGAAAATGCACACTGCATCTGCTTTATGTTTGTAAACTGGTCTTTTGTCTGA 2517 47.04 MAMSCKDGNKHAIDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSHIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSHLVYENGYFRQHTQSTTLGAKDTSCEPVVTSGQHNLTSQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDKPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTMAALRQLRQIAHEVSQSNVTGWGRRPAALRALSQRLTRGFNEALNGFNDEGWSVMGNDGMDDVTILVNSSPDKLMGLNISFANGFSAISNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNIDAYSAAAVKVGPWSLPGSRVGSFGNQVILPLAHTIEHEEFLEVIKLEGVGHTPEEAMMPREMFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALEIGPAGNRAPNDSVNSGCTRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHGGLRSPLGTPEAQTLARWICNSYRCYLGVELLKSGNEGGGELVLKTLWHHSDAIMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGKKTLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNEEENAHCICFMFVNWSFV 838
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 72054457 72061616 - Hsped.03g15170.1 Hepe03g1517 566515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1517 838 Pfam MEKHLA domain 694 837 IPR013978 -
Hepe03g1517 838 SMART HOX_1 14 80 IPR001356 GO:0003677(InterPro)
Hepe03g1517 838 Pfam START domain 161 369 IPR002913 GO:0008289(InterPro)
Hepe03g1517 838 CDD homeodomain 17 77 IPR001356 GO:0003677(InterPro)
Hepe03g1517 838 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677(InterPro)
Hepe03g1517 838 MobiDBLite consensus disorder prediction 127 150 - -
Hepe03g1517 838 Coils Coil 72 106 - -
Hepe03g1517 838 SUPERFAMILY Homeodomain-like 17 80 IPR009057 -
Hepe03g1517 838 Gene3D - 9 83 - -
Hepe03g1517 838 SUPERFAMILY Bet v1-like 160 371 - -
Hepe03g1517 838 CDD bZIP 69 108 - -
Hepe03g1517 838 Gene3D - 195 376 IPR023393 -
Hepe03g1517 838 MobiDBLite consensus disorder prediction 127 154 - -
Hepe03g1517 838 ProSiteProfiles START domain profile. 151 379 IPR002913 GO:0008289(InterPro)
Hepe03g1517 838 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 10 838 IPR044830 GO:0003700(InterPro)
Hepe03g1517 838 CDD START_ArGLABRA2_like 155 371 - -
Hepe03g1517 838 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
Hepe03g1517 838 FunFam homeobox-leucine zipper protein ATHB-15 196 377 - -
Hepe03g1517 838 SMART START_1 160 370 IPR002913 GO:0008289(InterPro)
Hepe03g1517 838 Pfam Homeodomain 17 75 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2216 Hepe-Chr1:86853700 Hepe03g1517 Hepe-Chr3:72054457 0.0 dispersed
Hepe03g1517 Hepe-Chr3:72054457 Hepe07g1716 Hepe-Chr7:59032528 0.0 dispersed
Hepe03g1517 Hepe-Chr3:72054457 Hepe04g2047 Hepe-Chr4:75327603 0.0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55294 PF01852 START 2.20E-54 CL0209 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1517 K09338 - csv:101213106 1662.12