Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1526 ATGGCAAACCCAAAGAATTCAGCTCCACTTTCTTCTTCTTCTTCTCCGATCACCCGGCCGGTTTCCGGCACCGAAGCGGCCCAACCAGACCGTCCGCCCGGCAAGAGACCCAGAGACTGCAGCAAACATCCAGTTTTCAGAGGCGTACGGAAAAGAAGCTGGGGAAAATGGGTGTCGGAAATCCGGCAGCCACGTAAGAAATCCCGAATTTGGCTCGGAACTTTTCCGACGCCGGAAATGGCGGCGCGTGCACACGACGCGGCGGCGCTTAGCATCAAAGGCGACTCGGCCATCCTCAATTACCCTGAACTCGCCGAGTTTTTGCCCCGGCCGGCGTCGCTCATGCCGCACGACGTTCAGGCCGCCGCCGCCAAAGCCGCAGCGATGGTCAATTTGAATTCCTCTGCATTGCCGTCGCCGTCACCGTCATCGGAGGAGGAGGAGTTAAGTGAGATCGTCGAGTTACCGAATATAGAAGACGATTTTGGTACTGAGTCGCTTAACGAGTTCAAATTAGTTACTGAGTCGTGGGAATGGTGGGAGTACGTGGCAATGCCGTTGGCGGCGGATTTCGGCGGCAGTTATTTTCCCGACAAGACGACGGCGGAAGACAGTTTATTCGCGAGCAGCTTTTACGGTGCTCTTTGGGATTAA 654 55.81 MANPKNSAPLSSSSSPITRPVSGTEAAQPDRPPGKRPRDCSKHPVFRGVRKRSWGKWVSEIRQPRKKSRIWLGTFPTPEMAARAHDAAALSIKGDSAILNYPELAEFLPRPASLMPHDVQAAAAKAAAMVNLNSSALPSPSPSSEEEELSEIVELPNIEDDFGTESLNEFKLVTESWEWWEYVAMPLAADFGGSYFPDKTTAEDSLFASSFYGALWD 217
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 72132703 72133356 - Hsped.03g15260.1 Hepe03g1526 566524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1526 217 MobiDBLite consensus disorder prediction 31 46 - -
Hepe03g1526 217 FunFam Ethylene-responsive transcription factor 2 44 103 - -
Hepe03g1526 217 MobiDBLite consensus disorder prediction 1 22 - -
Hepe03g1526 217 Pfam AP2 domain 44 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1526 217 CDD AP2 46 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1526 217 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 22 159 IPR051032 -
Hepe03g1526 217 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1526 217 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1526 217 SMART rav1_2 45 108 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1526 217 MobiDBLite consensus disorder prediction 1 46 - -
Hepe03g1526 217 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1526 217 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1526 217 SUPERFAMILY DNA-binding domain 45 102 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1526 Hepe-Chr3:72132703 Hepe08g2612 Hepe-Chr8:68003145 1.09e-41 dispersed
Hepe05g2073 Hepe-Chr5:71232350 Hepe03g1526 Hepe-Chr3:72132703 4.88e-39 transposed
Hepe10g0364 Hepe-Chr10:3964166 Hepe03g1526 Hepe-Chr3:72132703 4.54e-45 wgd
Hepe02g1438 Hepe-Chr2:18336072 Hepe03g1526 Hepe-Chr3:72132703 1.10e-50 wgd
Hepe03g1526 Hepe-Chr3:72132703 Hepe09g0797 Hepe-Chr9:7758930 2.08e-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55296 PF00847 AP2 1.30E-14 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1526 K09286 - csv:101217361 304.293