Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1531 ATGGCCTGGTTCACCATTGGAAGCTTTCAAGATTCCTTCAGCTTGCGCTCTTGCAAGGCTTATCTTGCTGAGTTCATCTCCACCCTCCTCTTCGTTTTCGCTGGCGTCGGCTCCGCCATTGCCTACAATAAAATAACATCGTCTGCAGCTCTAGATCCAGCTGGGCTAGCAGCGGTGGCTGTTTCCCATGGATTTGCTTTGTTTGTTGCAGTCTCCGTCAGCGCCAACATCTCCGGTGGTCACGTTAACCCGGCGGTGACGTTCGGGCTTCTTCTTGGAGACCAAATCACCCTAATTACCACCATATTTTACTGGATTGCTCAGCTTCTTGGCTCCATTGTTGCTTGCTACCTTCTCAAATATGTCACTGGCGGCCTGGCAGTTCCGGTCCACAGCCTTGCTGCCGGTGTCGGAGTGGCGGAAGGAATTGTGACGGAGATCGTAATCACCTTCGGTCTGGTTTACACGGTCTATGCAACGGCGGCCGACCCAAAGAAGGGATCATTGGGCACAATTGCGCCGATTGCCATCGGTTTCATCGTCGGAGCAAACATCTTGGCGGCCGGACCATTTTCCGGCGGGTCGATGAACCCGGCCCGGTCGTTTGGACCGGCGGTGGTCAGTGGAGACTTTCACAACAACTGGATTTACTGGGTTGGGCCGCTGGTTGGCGGTGGCTTAGCTGGGCTTATCTACTTTTACGCCTTTATGGCTTATGGGCCCAGCCCAATCCCAAGCGATTTCTAA 747 53.95 MAWFTIGSFQDSFSLRSCKAYLAEFISTLLFVFAGVGSAIAYNKITSSAALDPAGLAAVAVSHGFALFVAVSVSANISGGHVNPAVTFGLLLGDQITLITTIFYWIAQLLGSIVACYLLKYVTGGLAVPVHSLAAGVGVAEGIVTEIVITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHNNWIYWVGPLVGGGLAGLIYFYAFMAYGPSPIPSDF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 72168875 72170552 - Hsped.03g15310.1 Hepe03g1531 566529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1531 248 PANTHER AQUAPORIN-8 5 238 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Hepe03g1531 248 SUPERFAMILY Aquaporin-like 14 242 IPR023271 -
Hepe03g1531 248 Pfam Major intrinsic protein 15 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g1531 248 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g1531 248 CDD MIP 19 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g1531 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Hepe03g1531 248 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
Hepe03g1531 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g1531 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g1531 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g1531 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g1531 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g1531 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Hepe03g1531 248 FunFam Probable aquaporin TIP1-1 2 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1531 Hepe-Chr3:72168875 Hepe04g0977 Hepe-Chr4:64216315 1.27e-98 dispersed
Hepe06g1352 Hepe-Chr6:63746089 Hepe03g1531 Hepe-Chr3:72168875 4.23e-63 transposed
Hepe06g1681 Hepe-Chr6:67823776 Hepe03g1531 Hepe-Chr3:72168875 3.15e-125 transposed
Hepe10g0358 Hepe-Chr10:3917491 Hepe03g1531 Hepe-Chr3:72168875 2.12e-79 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1531 K09873 - csv:101218611 449.899