Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1543 ATGGCCGTCGTCATGTCCGACAACCACCGCCGTCTGAAGATTGTTCCGTCTTCTCCGGCCCTCTCTCTCACTCTTGCTGGTGTTTTTGGGAATGCGGCGGCGGCGATGGATGTGGAGGTGGACGCGCCGGCGAGGAGAGAGGACAGCTACAGTGACAACTCTGAGCCGGCGGGATCGAGGTCGGCGGAGGATTTGGGGGCCGACCCAGATGATGAAGATGAAGATAAATTACAGGGAAATACAAAGAAGAGGAAGAATCGTCATACTTCAGAGCAAATCAGAGAAATGGAGATATTGTTTAAAGAATCACCACATCCAGATGAGAAACAGCGGCAGCATCTGAGTGAGAAACTTGGTCTTTCGTCTAAGCAAATCAAGTTCTGGTTTCAGAATCGAAGAACACAAATCAAGGCAATTCACGAACGCCATGAAAACGCACTGTTGAAAGGAGAAATGGAGAAATTGCGAGAAGAAAACATAGCGATGAAGCAAATTATCAACAAATCTTCTTGCCCAAAATGTGCTAATTACTCCATACCTACTCCTGTAGACACAATTTTCTCCGGTTCTGACCAGCAACCACAACAACTAATCACTGAAATTACTCGACTCAAAGCTCAGGTCAAAAGATTGCAAACGGCTCTAGAGAAACACGATCCTACAGGGACGTCACGATCGGGGGAGAACGACGAGGGGATAGAGAGAAGGAGGATGAATTTGGAAAAATCGAAGAGTATTTTCGGACTGGAGAAAGCTAGGGTTATGGAGATAACGAATCGAGCGATTGCCGAGCTCTTGAAAATGGCAGATTACGATGAGTCACTTTGGGTTCGGAGCGTCGAAACAGGACGAGAACTACTGAATTATGACGTGTATATGAAGGAATTTGTCGTCGAAAACGAGCGACCGAAGAAAGAAGTTGAAGCGTCGAGAGAATCTGGCGTTGTGTTTGTTGATCCTCAACGATTGGTTCAAAGCTTCATGGATGTGGTTCAGTGGCAAGAAATGTTTCCGTCGATAATCTCGAAGGCGTCGACAATAGAAGTCGTCAGAAATGGCGACGGGACCACCAAGAATGGCGCAGTTCAATTGATGTTTGCAGAGCTACAAATGCTCACCCCCACCCTCCCCCCAAGAGAGGTCTATTTCATCCGAAGTTGCAAGCAACTAAGCCCCGAAAAGTGGGTCGTCGTTGATGTCTCCATCGACCAAGTCGGAGATAACATCGACTCGTCCTCCTCTCTTTGCAGGAAACGCCCATCCGGTTGCATCATCGAGGACACATCTAACGGCCATTGTAAGGTCACTTGGGTGGAGCATTATTGGGAATGCCAGAAGATCGGACTTCGCACGATATATCGAACCATCGTCAACCGCGGTTTGATATTCGGGGCGAGGCATTGGATGGCGACGCTGCAAATCCATTGTGAGTGGCAGGTTTTCTTCATGGCCACCAACGTTCCCATGAAGGATTCTATGGGAATCACCACTCTTGGTGGGAGAAAAAGTGTTCTTCGATTGGCGCAGAGAATGACATCTAGTTTTTATCAAGCCATTGGTGCTTCAAGCAGCCATACATGGACCAAGGTCCAAACCAAAACAGGTGAAAACATAAGGGTTGCTTCTAGGAAAAACTTGAAAGACCCTCGACAACCTCTTGGTTTGATCTTGTGTGCAGTTGCTTCTGTGTGGCTACCTGTTTCTCCTAAAGTCTTGTTCGAATTCTTGATGGACGAAGCTCGTCGACCCGAGTGGGATGTGATGTCGAGTGGCTTTCCAGCTGAAACACTAGCAAACTTTGCCAAAGGACAAAATCGAGGCAATGTCGTTACAATCCAAGAAATAAAATCAGATGAAACCAACATGTGGATTCTTCAAGATAGTCTAACAAACGAATATGAATCGATGGTGATCTATGCTCAAGTTGACATTAAGAGCATGCAGTCTGTGATGGCGGGGTGCGACCCGGAAAACATCGTCGTGTTACCGACGGGCTTCTCGATCCTCCCGGACGGGCACGAGTCGAGGCCATTGGTTATGAGTTCGAGCGAAGAGAAGGGAACAGAAGGAGGCTCGTTACTAACAATTGCAGCTCAAATTCTAGTTAGTGCCTCACCCACAGCTGAGACAACCTCGGAATCTGTGGAGTATGTTAATAATGTTATATCACATACGTTGAAAAATATTAAAGCAATGCTGCAAGGCGAGGATGACTGA 2217 47.14 MAVVMSDNHRRLKIVPSSPALSLTLAGVFGNAAAAMDVEVDAPARREDSYSDNSEPAGSRSAEDLGADPDDEDEDKLQGNTKKRKNRHTSEQIREMEILFKESPHPDEKQRQHLSEKLGLSSKQIKFWFQNRRTQIKAIHERHENALLKGEMEKLREENIAMKQIINKSSCPKCANYSIPTPVDTIFSGSDQQPQQLITEITRLKAQVKRLQTALEKHDPTGTSRSGENDEGIERRRMNLEKSKSIFGLEKARVMEITNRAIAELLKMADYDESLWVRSVETGRELLNYDVYMKEFVVENERPKKEVEASRESGVVFVDPQRLVQSFMDVVQWQEMFPSIISKASTIEVVRNGDGTTKNGAVQLMFAELQMLTPTLPPREVYFIRSCKQLSPEKWVVVDVSIDQVGDNIDSSSSLCRKRPSGCIIEDTSNGHCKVTWVEHYWECQKIGLRTIYRTIVNRGLIFGARHWMATLQIHCEWQVFFMATNVPMKDSMGITTLGGRKSVLRLAQRMTSSFYQAIGASSSHTWTKVQTKTGENIRVASRKNLKDPRQPLGLILCAVASVWLPVSPKVLFEFLMDEARRPEWDVMSSGFPAETLANFAKGQNRGNVVTIQEIKSDETNMWILQDSLTNEYESMVIYAQVDIKSMQSVMAGCDPENIVVLPTGFSILPDGHESRPLVMSSSEEKGTEGGSLLTIAAQILVSASPTAETTSESVEYVNNVISHTLKNIKAMLQGEDD 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 72277456 72286371 + Hsped.03g15430.1 Hepe03g1543 566541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1543 738 Pfam START domain 257 477 IPR002913 GO:0008289(InterPro)
Hepe03g1543 738 Coils Coil 138 165 - -
Hepe03g1543 738 CDD homeodomain 82 137 IPR001356 GO:0003677(InterPro)
Hepe03g1543 738 ProSiteProfiles 'Homeobox' domain profile. 79 139 IPR001356 GO:0003677(InterPro)
Hepe03g1543 738 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 71 734 IPR042160 -
Hepe03g1543 738 Gene3D - 69 150 - -
Hepe03g1543 738 SUPERFAMILY Bet v1-like 521 729 - -
Hepe03g1543 738 MobiDBLite consensus disorder prediction 75 92 - -
Hepe03g1543 738 ProSiteProfiles START domain profile. 247 481 IPR002913 GO:0008289(InterPro)
Hepe03g1543 738 MobiDBLite consensus disorder prediction 43 92 - -
Hepe03g1543 738 FunFam Homeobox-leucine zipper protein GLABRA 2 256 477 - -
Hepe03g1543 738 SUPERFAMILY Bet v1-like 249 477 - -
Hepe03g1543 738 SUPERFAMILY Homeodomain-like 72 138 IPR009057 -
Hepe03g1543 738 SMART START_1 256 478 IPR002913 GO:0008289(InterPro)
Hepe03g1543 738 FunFam Homeobox-leucine zipper protein HDG1 68 155 - -
Hepe03g1543 738 CDD START_ArGLABRA2_like 251 477 - -
Hepe03g1543 738 Pfam Homeodomain 82 137 IPR001356 GO:0003677(InterPro)
Hepe03g1543 738 Gene3D - 255 461 IPR023393 -
Hepe03g1543 738 ProSitePatterns 'Homeobox' domain signature. 114 137 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe03g1543 738 SMART HOX_1 81 143 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1543 Hepe-Chr3:72277456 Hepe07g0176 Hepe-Chr7:1574301 6.92e-149 dispersed
Hepe02g1423 Hepe-Chr2:18101679 Hepe03g1543 Hepe-Chr3:72277456 9.58e-259 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55298 PF01852 START 3.90E-49 CL0209 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1543 K09338 - csv:101218545 1138.25