Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1558 ATGGATTTCTGGCCAGAGTTCCTCGCAAACAGTTGGGGTAAAGAATTTGTCGCCGGCGGATTTGGTGGCATCGCCGGCATAGTCTCCGGCTACCCACTTGATACTCTAAGAATAAGGCAACAACAATCGAATTCTGGTTCTGCTTCGAAAATATTTCGTAATATCATCGCTAACGATGGCCCTGCTGGTCTTTACAGAGGCATGGCTGCTCCTTTGGCCTCTGTCACTTTCCAGAACGCCGCCGTGTTTCAGATCTACGCCGTTCTTTCTCGAGCATTCAACTCATCTCGATCCAACGGTGACCCTCCAAGCTATAAGGCTGTGGCATTTGGAGGAATTGGCACCGGAGCTCTCCAAAGCTTCATCCTGTCGCCGGTGGAGCTGGTGAAGATCCGCCTGCAATTGCAAAGTTCAAGCCATTCAGAATCATCACAAAAATTAATTCCTTCTTCTCACAGAGGCCCTGTGAGCGTAGTCAAAAGCATCTACAAAACAGAAGGATTGAGAGGGATCTACAGAGGACTTACCATAACAATGCTCAGAGATGCACCCGCATATGGCATCTATTTCTGGACATACGAGTGCATGAGGGAGCAGTTTCATCCTGGCTGCCGAAAGACCGGCCAAGAGAGCGTCAGCACAATGCTGGTTGCCGGAGGGCTCGCCGGAGTCTCCAGCTGGGTTTTTTGTTATCCATCGGATGTGTTGAAGACAAGAATTCAGGCTCAGACACAAAGTTCGTCTAGAAAGTACAATGGAATTGTTGATTGTCTAAGCAAGAGTGTGAGAGAAGAGGGTTACAGAGTGCTGTGGAGAGGGCTGGGGACTGCGGTTGCTAGAGCATTTGTGGTAAATGGGGCTGTTTTTGCTGCTTATGAGATAAGTTTGAGGTATTTGTTTAGCAATGGAAGCAATCAGACACAGCATTGA 930 48.39 MDFWPEFLANSWGKEFVAGGFGGIAGIVSGYPLDTLRIRQQQSNSGSASKIFRNIIANDGPAGLYRGMAAPLASVTFQNAAVFQIYAVLSRAFNSSRSNGDPPSYKAVAFGGIGTGALQSFILSPVELVKIRLQLQSSSHSESSQKLIPSSHRGPVSVVKSIYKTEGLRGIYRGLTITMLRDAPAYGIYFWTYECMREQFHPGCRKTGQESVSTMLVAGGLAGVSSWVFCYPSDVLKTRIQAQTQSSSRKYNGIVDCLSKSVREEGYRVLWRGLGTAVARAFVVNGAVFAAYEISLRYLFSNGSNQTQH 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 72376520 72378191 - Hsped.03g15580.1 Hepe03g1558 566556

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1558 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 199 IPR018108 -
Hepe03g1558 309 Pfam Mitochondrial carrier protein 210 301 IPR018108 -
Hepe03g1558 309 Pfam Mitochondrial carrier protein 11 95 IPR018108 -
Hepe03g1558 309 Pfam Mitochondrial carrier protein 109 200 IPR018108 -
Hepe03g1558 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 210 298 IPR018108 -
Hepe03g1558 309 Gene3D Mitochondrial carrier domain 109 309 IPR023395 -
Hepe03g1558 309 Gene3D Mitochondrial carrier domain 2 108 IPR023395 -
Hepe03g1558 309 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085(InterPro)
Hepe03g1558 309 PRINTS Mitochondrial carrier protein signature 172 190 IPR002067 GO:0055085(InterPro)
Hepe03g1558 309 PRINTS Mitochondrial carrier protein signature 219 241 IPR002067 GO:0055085(InterPro)
Hepe03g1558 309 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085(InterPro)
Hepe03g1558 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 92 IPR018108 -
Hepe03g1558 309 SUPERFAMILY Mitochondrial carrier 11 293 IPR023395 -
Hepe03g1558 309 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 9 299 IPR050567 GO:0006810(PANTHER)|GO:0022857(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1558 K15109 - - csv:101222165 525.013
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1558 Hepe-Chr3:72376520 Hepe04g0728 Hepe-Chr4:61144111 6.59e-23 dispersed
Hepe02g1414 Hepe-Chr2:18029169 Hepe03g1558 Hepe-Chr3:72376520 8.13e-159 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g366 Blo05g00097 . . . Bpe06g00730 . . . Cmo08g00656 Cmo17g00772 Cma01g00111 Cma14g01309 Car01g00097 Car14g01160 . Cpe12g00690 Cpe17g00563 Bhi01g03422 . . . . . . Cla07g01247 Cam07g1258 Cec07g1425 Cco07g1383 Clacu07g1308 Cmu07g1284 Cre07g1665 Cone20ag1234 Cone17ag0178 . . Lsi02g02791 Csa07g02237 . Cme01g02686 . . . . . . . . Sed06g2154 Cmo01g00116 Cmo14g01344 Cma08g00693 Cma17g00803 Car08g00582 Car17g00746 Cpe02g01678 Cpe03g01111 Bhi09g00146 Tan06g0306 Cmetu04g3033 . Hepe03g1558 . . Cla09g00190 Cam09g0207 Cec09g0212 Cco09g0206 Clacu09g0209 . Cre09g0198 Lsi07g00504 Csa03g02399 Chy01g02068 Cme04g01097
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe04g1877 . 1 407 Antiporters AT5G46110 78.4 6.5e-170 594.0
Hepe10g1791 . 48 405 Antiporters AT5G46110 76.0 3.4e-147 518.5
Hepe01g1296 . 1 395 Antiporters AT5G54800 73.7 1.8e-158 555.8
Hepe04g1780 . 21 393 Antiporters AT5G54800 74.1 6.9e-150 527.3
Hepe05g1847 . 82 403 Antiporters AT5G54800 51.5 4.9e-87 318.5
Hepe02g3091 . 55 399 Antiporters AT3G01550 65.3 2.1e-122 436.0
Hepe07g2223 . 58 417 Antiporters AT3G01550 59.0 1.1e-110 397.1
Hepe07g2223 . 1 419 Antiporters AT5G33320 72.0 4.4e-155 544.7
Hepe02g3091 . 72 400 Antiporters AT5G33320 62.1 5.7e-110 394.8
Hepe01g1296 . 24 396 Antiporters AT1G61800 74.9 1.5e-158 556.2
Hepe04g1780 . 1 390 Antiporters AT1G61800 72.7 1.8e-156 549.3
Hepe05g1847 . 102 407 Antiporters AT1G61800 52.3 1.1e-84 310.8
Hepe05g1847 . 1 419 Antiporters AT5G17630 68.1 1.8e-151 532.7
Hepe01g1296 . 66 394 Antiporters AT5G17630 53.0 1.7e-90 330.1
Hepe04g1780 . 94 391 Antiporters AT5G17630 54.2 6.9e-87 318.2
Hepe08g0368 . 25 403 Antiporters AT3G13320 76.1 5.1e-157 551.2
Hepe06g0649 . 24 399 Antiporters AT3G13320 76.9 1.6e-155 546.2
Hepe02g1586 . 57 423 Antiporters AT3G13320 76.1 1.0e-152 537.0
Hepe04g0753 . 8 419 Antiporters AT2G38170 71.5 7.9e-156 547.4
Hepe05g0092 . 7 377 Antiporters AT2G38170 59.3 1.6e-116 416.8
Hepe06g0649 . 23 406 Antiporters AT2G38170 50.5 2.1e-92 336.7
Hepe10g1320 . 24 346 Antiporters AT2G38170 51.9 3.1e-91 332.8
Hepe04g0753 . 5 401 Antiporters AT3G51860 72.1 2.1e-148 522.7
Hepe05g0092 . 4 376 Antiporters AT3G51860 61.4 6.7e-123 438.0
Hepe10g1320 . 24 335 Antiporters AT3G51860 54.6 1.0e-91 334.3
Hepe06g0649 . 30 370 Antiporters AT3G51860 53.3 1.9e-85 313.5
Hepe02g1586 . 63 394 Antiporters AT3G51860 50.7 5.0e-78 288.9
Hepe04g0753 . 36 419 Antiporters AT5G01490 62.1 3.0e-128 455.7
Hepe05g0092 . 23 377 Antiporters AT5G01490 56.3 5.5e-106 381.7
Hepe06g0649 . 25 399 Antiporters AT1G55720 75.0 6.4e-147 517.7
Hepe08g0368 . 25 399 Antiporters AT1G55720 73.4 6.4e-147 517.7
Hepe02g1586 . 57 423 Antiporters AT1G55720 70.3 4.1e-138 488.4
Hepe04g0753 . 67 419 Antiporters AT1G55720 50.1 1.1e-87 320.9
Hepe06g0649 . 25 399 Antiporters AT1G55730 78.9 9.3e-159 557.0
Hepe08g0368 . 26 399 Antiporters AT1G55730 76.8 1.8e-157 552.7
Hepe02g1586 . 57 423 Antiporters AT1G55730 75.5 3.8e-152 535.0
Hepe04g0753 . 67 419 Antiporters AT1G55730 51.5 2.2e-91 333.2
Hepe09g1607 . 4 534 Antiporters AT5G27150 77.3 4.4e-235 810.8
Hepe03g0130 . 18 524 Antiporters AT5G27150 75.0 4.8e-218 754.2
Hepe03g1940 . 25 532 Antiporters AT5G27150 70.9 4.7e-205 711.1
Hepe01g1235 . 12 517 Antiporters AT5G27150 58.9 6.6e-167 584.3
Hepe03g0130 . 18 534 Antiporters AT3G06370 72.7 5.0e-210 727.6
Hepe09g1607 . 5 533 Antiporters AT3G06370 69.9 4.8e-205 711.1
Hepe03g1940 . 25 534 Antiporters AT3G06370 68.2 6.1e-192 667.5
Hepe01g1235 . 12 517 Antiporters AT3G06370 59.7 7.8e-163 570.9
Hepe01g1235 . 1 523 Antiporters AT5G55470 70.7 2.7e-213 738.4
Hepe03g0130 . 15 511 Antiporters AT5G55470 59.5 7.7e-168 587.4
Hepe09g1607 . 18 520 Antiporters AT5G55470 58.6 6.5e-167 584.3
Hepe03g1940 . 16 518 Antiporters AT5G55470 55.6 1.7e-154 543.1
Hepe09g1607 . 10 534 Antiporters AT3G05030 79.1 2.7e-240 828.2
Hepe03g0130 . 18 524 Antiporters AT3G05030 75.8 1.9e-222 768.8
Hepe03g1940 . 25 535 Antiporters AT3G05030 71.3 1.6e-208 722.6
Hepe01g1235 . 12 517 Antiporters AT3G05030 59.6 9.4e-169 590.5
Hepe02g1390 . 102 667 Antiporters AT1G15460 69.7 2.9e-229 791.6
Hepe10g0274 . 99 652 Antiporters AT1G15460 65.8 4.5e-214 741.1
Hepe02g1172 . 102 645 Antiporters AT1G15460 59.7 3.0e-181 632.1
Hepe07g2224 . 102 644 Antiporters AT1G15460 57.2 6.4e-176 614.4
Hepe02g1172 . 3 709 Antiporters AT3G06450 70.1 4.3e-294 1007.3
Hepe07g2224 . 3 683 Antiporters AT3G06450 69.6 1.9e-281 965.3
Hepe10g0274 . 3 638 Antiporters AT3G06450 55.9 6.4e-213 737.6
Hepe02g1390 . 6 647 Antiporters AT3G06450 55.8 1.4e-212 736.5
Hepe02g1172 . 1 711 Antiporters AT2G47160 80.1 0.0e+00 1154.8
Hepe07g2224 . 1 670 Antiporters AT2G47160 74.8 7.8e-304 1039.6
Hepe02g1390 . 7 647 Antiporters AT2G47160 56.3 4.0e-215 745.0
Hepe10g0274 . 4 638 Antiporters AT2G47160 56.8 4.9e-213 738.0
Hepe02g1390 . 5 669 Antiporters AT1G74810 69.3 3.5e-274 941.0
Hepe10g0274 . 4 652 Antiporters AT1G74810 66.6 3.7e-255 877.9
Hepe02g1172 . 1 645 Antiporters AT1G74810 59.5 2.5e-219 758.8
Hepe07g2224 . 7 644 Antiporters AT1G74810 58.2 2.6e-216 748.8
Hepe02g1172 . 1 708 Antiporters AT3G62270 81.9 0.0e+00 1159.1
Hepe07g2224 . 1 694 Antiporters AT3G62270 76.0 1.7e-308 1055.0
Hepe10g0274 . 4 638 Antiporters AT3G62270 59.0 6.8e-220 760.8
Hepe02g1390 . 7 647 Antiporters AT3G62270 58.3 1.3e-218 756.5
Hepe10g0274 . 4 648 Antiporters AT4G32510 68.8 1.1e-262 902.9
Hepe02g1390 . 1 664 Antiporters AT4G32510 65.1 7.8e-258 886.7
Hepe02g1172 . 1 646 Antiporters AT4G32510 55.6 3.0e-209 725.3
Hepe07g2224 . 1 650 Antiporters AT4G32510 54.2 2.0e-205 712.6
Hepe10g0274 . 4 644 Antiporters AT5G25430 69.7 1.9e-259 892.1
Hepe02g1390 . 7 655 Antiporters AT5G25430 66.0 8.1e-247 850.1
Hepe02g1172 . 7 645 Antiporters AT5G25430 56.3 2.8e-207 718.8
Hepe07g2224 . 7 656 Antiporters AT5G25430 54.4 5.1e-201 698.0
Hepe02g2582 . 25 1141 Antiporters AT2G01980 65.7 0.0e+00 1370.5
Hepe02g2582 . 25 738 Antiporters AT1G14660 66.1 6.7e-271 930.2
Hepe08g1388 . 26 586 Antiporters AT5G11800 79.2 3.2e-239 824.7
Hepe09g0861 . 19 586 Antiporters AT5G11800 75.1 5.5e-223 770.8
Hepe07g0220 . 59 580 Antiporters AT5G11800 68.3 4.9e-187 651.4
Hepe07g0220 . 33 578 Antiporters AT5G51710 81.9 4.9e-245 844.0
Hepe08g1388 . 23 560 Antiporters AT5G51710 67.1 7.9e-187 650.6
Hepe09g0861 . 51 554 Antiporters AT5G51710 69.2 1.4e-180 629.8
Hepe08g1388 . 44 586 Antiporters AT2G19600 80.6 3.8e-232 801.2
Hepe09g0861 . 7 583 Antiporters AT2G19600 76.2 5.3e-226 780.8
Hepe07g0220 . 51 565 Antiporters AT2G19600 69.2 1.5e-180 629.8
Hepe07g0448 . 150 568 Antiporters AT1G49810 74.8 2.0e-171 599.0
Hepe07g0448 . 1 583 Antiporters AT3G19490 74.0 2.5e-236 815.1
Hepe08g0122 . 84 569 Antiporters AT5G12860 91.0 1.6e-253 872.1
Hepe07g0347 . 69 566 Antiporters AT5G64280 66.9 1.5e-190 662.9
Hepe07g0347 . 1 566 Antiporters AT5G64290 70.8 7.1e-212 733.8
Hepe08g0122 . 101 570 Antiporters AT5G64290 50.6 1.0e-125 447.6
Hepe02g0128 . 3 378 Antiporters AT4G28390 81.5 3.9e-174 607.8
Hepe04g1378 . 3 390 Antiporters AT4G28390 74.2 3.5e-154 541.6
Hepe03g1739 . 3 390 Antiporters AT4G28390 73.1 1.0e-153 540.0
Hepe07g2442 . 3 305 Antiporters AT4G28390 62.6 4.4e-109 391.7
Hepe03g1739 . 1 391 Antiporters AT3G08580 78.6 1.3e-172 602.8
Hepe04g1378 . 1 391 Antiporters AT3G08580 77.9 2.0e-170 595.5
Hepe02g0128 . 1 377 Antiporters AT3G08580 71.8 1.3e-148 523.1
Hepe07g2442 . 7 305 Antiporters AT3G08580 58.3 4.2e-99 358.6
Hepe03g1739 . 1 391 Antiporters AT5G13490 80.7 1.9e-179 625.5
Hepe04g1378 . 1 391 Antiporters AT5G13490 80.0 6.6e-177 617.1
Hepe02g0128 . 8 377 Antiporters AT5G13490 77.6 6.2e-159 557.4
Hepe07g2442 . 8 305 Antiporters AT5G13490 62.8 5.9e-109 391.3
Hepe07g2442 . 4 299 Antiporters AT5G17400 79.5 5.3e-137 484.2
Hepe02g0128 . 78 367 Antiporters AT5G17400 63.8 2.8e-109 392.1
Hepe03g1739 . 90 382 Antiporters AT5G17400 62.5 3.1e-105 378.6
Hepe04g1378 . 90 380 Antiporters AT5G17400 62.5 7.0e-105 377.5
Hepe09g1826 . 3 539 Antiporters AT1G08960 66.5 4.5e-187 651.4
Hepe05g0781 . 1 559 Antiporters AT5G17850 50.9 3.1e-151 532.3
Hepe02g1108 . 33 573 Antiporters AT2G47600 69.9 2.1e-213 738.8
Hepe03g1558 . 1 302 Antiporters AT1G79900 66.7 1.5e-115 412.9
Hepe02g1414 . 1 305 Antiporters AT1G79900 66.0 8.0e-114 407.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002141 0 2 1 0 1 2 4 2 2 2 2 2 4 2 2 3 2 3 4 2 2 2 2 2 2 2 2 4 3 1 64