Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1558 ATGGATTTCTGGCCAGAGTTCCTCGCAAACAGTTGGGGTAAAGAATTTGTCGCCGGCGGATTTGGTGGCATCGCCGGCATAGTCTCCGGCTACCCACTTGATACTCTAAGAATAAGGCAACAACAATCGAATTCTGGTTCTGCTTCGAAAATATTTCGTAATATCATCGCTAACGATGGCCCTGCTGGTCTTTACAGAGGCATGGCTGCTCCTTTGGCCTCTGTCACTTTCCAGAACGCCGCCGTGTTTCAGATCTACGCCGTTCTTTCTCGAGCATTCAACTCATCTCGATCCAACGGTGACCCTCCAAGCTATAAGGCTGTGGCATTTGGAGGAATTGGCACCGGAGCTCTCCAAAGCTTCATCCTGTCGCCGGTGGAGCTGGTGAAGATCCGCCTGCAATTGCAAAGTTCAAGCCATTCAGAATCATCACAAAAATTAATTCCTTCTTCTCACAGAGGCCCTGTGAGCGTAGTCAAAAGCATCTACAAAACAGAAGGATTGAGAGGGATCTACAGAGGACTTACCATAACAATGCTCAGAGATGCACCCGCATATGGCATCTATTTCTGGACATACGAGTGCATGAGGGAGCAGTTTCATCCTGGCTGCCGAAAGACCGGCCAAGAGAGCGTCAGCACAATGCTGGTTGCCGGAGGGCTCGCCGGAGTCTCCAGCTGGGTTTTTTGTTATCCATCGGATGTGTTGAAGACAAGAATTCAGGCTCAGACACAAAGTTCGTCTAGAAAGTACAATGGAATTGTTGATTGTCTAAGCAAGAGTGTGAGAGAAGAGGGTTACAGAGTGCTGTGGAGAGGGCTGGGGACTGCGGTTGCTAGAGCATTTGTGGTAAATGGGGCTGTTTTTGCTGCTTATGAGATAAGTTTGAGGTATTTGTTTAGCAATGGAAGCAATCAGACACAGCATTGA 930 48.39 MDFWPEFLANSWGKEFVAGGFGGIAGIVSGYPLDTLRIRQQQSNSGSASKIFRNIIANDGPAGLYRGMAAPLASVTFQNAAVFQIYAVLSRAFNSSRSNGDPPSYKAVAFGGIGTGALQSFILSPVELVKIRLQLQSSSHSESSQKLIPSSHRGPVSVVKSIYKTEGLRGIYRGLTITMLRDAPAYGIYFWTYECMREQFHPGCRKTGQESVSTMLVAGGLAGVSSWVFCYPSDVLKTRIQAQTQSSSRKYNGIVDCLSKSVREEGYRVLWRGLGTAVARAFVVNGAVFAAYEISLRYLFSNGSNQTQH 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 72376520 72378191 - Hsped.03g15580.1 Hepe03g1558 566556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1558 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 103 199 IPR018108 -
Hepe03g1558 309 Pfam Mitochondrial carrier protein 210 301 IPR018108 -
Hepe03g1558 309 Pfam Mitochondrial carrier protein 11 95 IPR018108 -
Hepe03g1558 309 Pfam Mitochondrial carrier protein 109 200 IPR018108 -
Hepe03g1558 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 210 298 IPR018108 -
Hepe03g1558 309 Gene3D Mitochondrial carrier domain 109 309 IPR023395 -
Hepe03g1558 309 Gene3D Mitochondrial carrier domain 2 108 IPR023395 -
Hepe03g1558 309 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085(InterPro)
Hepe03g1558 309 PRINTS Mitochondrial carrier protein signature 172 190 IPR002067 GO:0055085(InterPro)
Hepe03g1558 309 PRINTS Mitochondrial carrier protein signature 219 241 IPR002067 GO:0055085(InterPro)
Hepe03g1558 309 PRINTS Mitochondrial carrier protein signature 118 136 IPR002067 GO:0055085(InterPro)
Hepe03g1558 309 ProSiteProfiles Solute carrier (Solcar) repeat profile. 13 92 IPR018108 -
Hepe03g1558 309 SUPERFAMILY Mitochondrial carrier 11 293 IPR023395 -
Hepe03g1558 309 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 9 299 IPR050567 GO:0006810(PANTHER)|GO:0022857(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1558 Hepe-Chr3:72376520 Hepe04g0728 Hepe-Chr4:61144111 6.59e-23 dispersed
Hepe02g1414 Hepe-Chr2:18029169 Hepe03g1558 Hepe-Chr3:72376520 8.13e-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1558 K15109 - csv:101222165 525.013