Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1583 ATGAGAAAAGAAGAAAATCACACCAGGGCTAATATTGGAGAATTCCCTGGTAGAATTACGCGGGCTCGGGCTGCTGCCTTTAGTGCATCAGCACAGCTGCCTCCAAAAGTTCCTGCACATCAACAGGAGAGGCGGGTTGCCCGAGCTAATCTGAAAAGAGCTGCTTCAGAAGAAAATAGCTGCAATTCTATTGCTCTATCATCTCGGCCATGTAAGAGGAGGGCCGTGCTTCAGGATGTCAGCAATATATGCTGTGAACCTTCATACTCGAAATGTTTTAATGCCGCTAAAATTGAGGTCAATAGTAGTAAGCCGACAATCAGAAACCGTCTCAAGAAGCCCAAAGGAGCCTCATCAGTTGGTGTGGCGAACACCAAGGTTCCTCTTGATCTTAGAACCAAAGGAGCTTCATCAGTTGGTGTGGCTTACTCCAAGGCCCCTCTTGATCTTAGAACACAAGGTGTACAAGCAAATGTCAAATCAAAAGCTAAGTTGAAAGTTGAACATTCAAGTAATTCTGAAGACCATGAGACACATCATCGAGTAGGTGGTATAAAGGAAGAGGCCACAAGTGATTTTCGGGATGATAATTGGAGGTCTCAAAGTCCTTCAGAGTCTCAAAATTTTCAAAATAAAGAGAAAGTGTTGCTTCTGGGGACAAGAAGCAACCTGGACATCACGGACATTGATTGTAACGACAGAGATGCTCAACTGTGCACTGTCTATGCCCATGATATCTATAACAATTTACGTGTTGCCGAGCTAACCAGAAGGCCACGTCCTGATTTCATGGAAACAGTGCAGACTGATATTACCCAAAGCATGCGGGGTATATTGGTTGATTGGCTTGTAGAGGTATCAGAGGAATACAAGTTAGTACCAGATACACTCTACCTAACTGTATTTTTCATTGATTGGTTTCTCTCCCAAAATTACCTCGAGAGACAAAAGCTTCAACTGCTGGGTATCACTTGCATGTTAATTGCCTCGAAGTATGAAGAAATTTGTGCACCACGTGTTGAAGACTTTTGTTTCATCACTGACAGCACCTACACAAAAGAGGAGGTATTGAATATGGAAGGTCAAATATTGAAGCATATGGGCTTTCAACTTTCTGCACCAACTGCAAAATCTTTCCTCAGGAGATATGTTCGAGCTGCACAAACGACATATAAGACTCCTAGTCTTGAACTCGAGTGCCTCGCCAACTATCTAGCCGAACTAACACTGGTTGACTACGGTTTCTTGAATTTTCTTCCCTCGGTTATAGCTGCATCGGCTGTATTTCTTTCCAAATGGACGTTGGATCAGTCGAGTCACCCATGGAATTCAACACTGGAATATTATACCTCGTATAAAGCTTCGGATCTGAAACAAACTGTTCTTGCTTTACAAGATTTACAGCTGAACACCAATGGTTGTCCTCTCAGTTCGATTCGCGTCAAGTATCGGCAAGAAAAGTTCAAAGCCGTCGCAACTTTGTCTTCCTCAAAATTACTTGATACGCTATTCTGA 1515 42.97 MRKEENHTRANIGEFPGRITRARAAAFSASAQLPPKVPAHQQERRVARANLKRAASEENSCNSIALSSRPCKRRAVLQDVSNICCEPSYSKCFNAAKIEVNSSKPTIRNRLKKPKGASSVGVANTKVPLDLRTKGASSVGVAYSKAPLDLRTQGVQANVKSKAKLKVEHSSNSEDHETHHRVGGIKEEATSDFRDDNWRSQSPSESQNFQNKEKVLLLGTRSNLDITDIDCNDRDAQLCTVYAHDIYNNLRVAELTRRPRPDFMETVQTDITQSMRGILVDWLVEVSEEYKLVPDTLYLTVFFIDWFLSQNYLERQKLQLLGITCMLIASKYEEICAPRVEDFCFITDSTYTKEEVLNMEGQILKHMGFQLSAPTAKSFLRRYVRAAQTTYKTPSLELECLANYLAELTLVDYGFLNFLPSVIAASAVFLSKWTLDQSSHPWNSTLEYYTSYKASDLKQTVLALQDLQLNTNGCPLSSIRVKYRQEKFKAVATLSSSKLLDTLF 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 72721886 72727759 + Hsped.03g15830.1 Hepe03g1583 566581
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1583 504 PIRSF Cyclin_A_B_D_E 28 503 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Hepe03g1583 504 SUPERFAMILY Cyclin-like 235 371 IPR036915 -
Hepe03g1583 504 MobiDBLite consensus disorder prediction 162 199 - -
Hepe03g1583 504 Pfam Cyclin, N-terminal domain 245 372 IPR006671 -
Hepe03g1583 504 MobiDBLite consensus disorder prediction 162 211 - -
Hepe03g1583 504 SUPERFAMILY Cyclin-like 374 497 IPR036915 -
Hepe03g1583 504 CDD CYCLIN_AtCycA-like_rpt2 374 488 - -
Hepe03g1583 504 Coils Coil 39 59 - -
Hepe03g1583 504 SMART Cyclin_C_2 374 497 IPR004367 -
Hepe03g1583 504 Gene3D - 245 493 - -
Hepe03g1583 504 PANTHER CYCLINS 227 484 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Hepe03g1583 504 SMART cyclin_7 281 365 IPR013763 -
Hepe03g1583 504 SMART cyclin_7 378 466 IPR013763 -
Hepe03g1583 504 CDD CYCLIN_AtCycA_like_rpt1 235 370 - -
Hepe03g1583 504 FunFam Cyclin A1 361 493 - -
Hepe03g1583 504 FunFam Mitotic cyclin 6 259 359 - -
Hepe03g1583 504 Gene3D - 259 372 - -
Hepe03g1583 504 Pfam Cyclin, C-terminal domain 374 496 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2047 Hepe-Chr1:85134402 Hepe03g1583 Hepe-Chr3:72721886 5.08e-135 dispersed
Hepe03g1583 Hepe-Chr3:72721886 Hepe08g1309 Hepe-Chr8:14807717 2.56e-90 dispersed
Hepe02g2221 Hepe-Chr2:62982401 Hepe03g1583 Hepe-Chr3:72721886 3.33e-100 transposed
Hepe10g0294 Hepe-Chr10:3124022 Hepe03g1583 Hepe-Chr3:72721886 5.20e-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1583 K06627 - csv:101222299 910.598