Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1610 ATGTATGGAAGAAAAGCATGCCAATTGGTGAAAGAGCTTGCAAACGCCGACAAAGGACAGTTCACACAGTTCAATAGCGACCTATTTGAACAGGTTATTTCAGAATGCCAGCAACATCATCTCGAGCTCCAATCCTTGATAAGGAAAGTACAGGAAGAAGGATTGGATCTACAAACGACTAAGAATGAAGATCATTTTGGTGCGCTCATTCACCACCTTGCATTAGTTCGCAATAAACGCTGCCTTATGGCTTATGTGTATAATCGAGCTGAGATTATAAGAAGTTTGATATGGAAGATAGTAGGATCTAGGCTTCCGCCAGAACTACAAGAGAAGCTCAGCAACTCAGAGGAAGAGTATTTTAAGAAGCATTCTGCACGTATAAAAGAATACATGTCGAATCTGCGGTTGGATTTGACTGTGGATATGGTGCCACCTAAGGACCCGTATATCCAGGTGAGGGTACTCGAGGACATCGGCGAAGGAATCGTACTGAGTGATGATAAAACAGCAAATTTTGCACTTCATTCCATACATTTTCTTAAACGAACTGATGCTGAGCAATTCATCTCACGGGTGGGGGAATGTTTCCTGGTCCCTTGCAGAGTGGCATTATGCACAACGCCACTAGAATTGACATGCTCCCAGTTGTTAGCAAGCGAGGTGTTTCCCGCACGTGCAGTGGAAGCACTTCTGTATCCAGGAGCCATTGCAAAAGCGATTTTTAAGAACAAGCCAATTCCAGGCTTTAATAGCTTGCCAAAGCTATACAAATTTATCCATGTAAAAGCAGCAGCTTCTTCTCCACTCACATCTGATCTCCACCGCCTCGAGGTTATTGCAGGAAGTTATTTGGCGGTAGGAGGAGCTATGATGGGCATGGTTAAACCAGGGAGGGGGAGAATGAGTCTATTTGGTTGCCTTCTTACAATCTGGGGAATTATTTGGAGGAAATCTTCACATTTCAATAATCCCAATATGAAAATCTATCCAACCATGTTTCTTGCTGTGTTTTTGGCTTTCTTCTCTGTCAGGAAGGATGTCAGGAGAATACTCCGCACCATTATTAAAGGGAAGCTCAAATGCAAATGA 1092 43.13 MYGRKACQLVKELANADKGQFTQFNSDLFEQVISECQQHHLELQSLIRKVQEEGLDLQTTKNEDHFGALIHHLALVRNKRCLMAYVYNRAEIIRSLIWKIVGSRLPPELQEKLSNSEEEYFKKHSARIKEYMSNLRLDLTVDMVPPKDPYIQVRVLEDIGEGIVLSDDKTANFALHSIHFLKRTDAEQFISRVGECFLVPCRVALCTTPLELTCSQLLASEVFPARAVEALLYPGAIAKAIFKNKPIPGFNSLPKLYKFIHVKAAASSPLTSDLHRLEVIAGSYLAVGGAMMGMVKPGRGRMSLFGCLLTIWGIIWRKSSHFNNPNMKIYPTMFLAVFLAFFSVRKDVRRILRTIIKGKLKCK 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 72979387 72985273 - Hsped.03g16100.1 Hepe03g1610 566608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1610 363 CDD GINS_B_Psf1 149 190 - -
Hepe03g1610 363 Gene3D - 1 135 - -
Hepe03g1610 363 SUPERFAMILY GINS helical bundle-like 1 147 IPR036224 -
Hepe03g1610 363 CDD GINS_A_psf1 3 135 IPR005339 GO:0000811(InterPro)|GO:0006260(InterPro)
Hepe03g1610 363 PANTHER PARTNER OF SLD5 1 192 IPR005339 GO:0000811(InterPro)|GO:0000811(PANTHER)|GO:0006260(InterPro)|GO:1902983(PANTHER)
Hepe03g1610 363 Pfam GINS complex protein helical bundle domain 62 135 IPR021151 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe10g0264 Hepe-Chr10:2719766 Hepe03g1610 Hepe-Chr3:72979387 2.43e-38 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1610 K10732 - csv:101205409 361.303