Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1615 ATGACATATTTTCCTAGTTTAAGCAATCTAAGAGACTCCATGTTAGGTGATCAGAAACTTGGTTCTTCTTGCCAAGAACAGCCTCTCTGTTCTGGGAATTTGATGATGTTTATGAATCATCAAGACCCTTCTTGTAGAGATTATTCTGATATTTTTTCTGGGGTTTCTTCAAACTATGTTGATGAATCTGTGGGAGATCATAGAAGTAATTGTGAAATGGATTTAAATTCCCACCTCGTGGGAATTTTAGATGACTCTAATTTCCAATGTCAGGGTGTTTCACTTAGCCTTTCCACACACTCACCCTCTGTTGTTTCTATGCCTTCATTTCCTCCCCTATATCAGACCCCTGCCATGGCCTCTTCATTCTTCAATGCACCTCCTTCGATCTTCGAGAAGAGGTCAAATTCAAAACTTTGTATGTCTGATGCAAAAAATGGCATGTATATGGCGGCGGGTTCAGGGAATTCGATGTCGAATTCAATATACATCGAAGCTGCACAGCAGTTGCTGGACGAAATGGTTAGCGTCCGGGAAGCTTTGAAGGAGATAAAGTCTAAGAAACTCAAAGGTTCCAATGGTTTGTGTGTTGATAGCTGCAGAGAAAATGATGGGGGATCTTCTAATGATCTGATGTGTTCCGATGTGAGGGAGTCGTCGATGGCCAATCCGTCCGGTGATCTATCGCCTACTGAACGACAGGACTTGAAGAACAAAAATTCAAAGCTTTTGTCCTTGTTGGGTGAGGTGGATCGAAGATACAAGCAATATTACCAACAGCTTCAATTTTTGGCGTCGTCTTTCGACATGGTAGCAGGCCGTGGGGCTGCAGAGTTCTACACTGCACTAGCACACCGGACTATTTCGTGCCACTTTCGCCGCTTGCGAGATGCAATCAATGCACAAATTGAGGTCACCAGGAGAGCCTTGGGGGAGCAAGATGCTTCACATTATGGTCAAGAGGGCATTCCTCGTCTCCGCTTTGTCGACCAACAGCTCAGGCAACAAAGGGCCCTTCAGCAGCTCGGCGTCACGCCACATAGTTGGAGGCCTCAACGAGGGCTTCCCGAAAGCTCTGTGTCGATTCTTCGCGCTTGGCTGTTCGAACACTTCCTCCATCCTTATCCCAAGGATTCAGAGAAACTCAAGCTAGCAAGACAAACTGGCCTGACTAGAAACCAAGTTGCAAACTGGTTTATAAATGCGCGTGTTCGGCTATGGAAACCGATGGTCGAGGAGATGTACAAAGAAGAATTTGGAGACTCCAACATGGATATCAAATCCTCCTCACCAGAAAACAATGCATCCAAAGCATCATGGAACAATTCACTATTCTCCGAAGATAGGGGAGGAGACAAGTTGCACGACAGCACGAAATCTGCAGCAAATAATGGCGAGCGAGTCCTCTACCGCTCGTGTTCTACCGACGACATGATCAAGTCGAGTAACTTCTCGGTGGGCGGAGACATTTCACTTGCATTGGAGTTGAAGCATTGTGAAGGTGATGAATTTGGCATGTTTGGGAGTAACAGCAGAATGGTTGGTTCTGTGGAGCTTGAGGCACAAGACTTTCCATGTTTGGAACCAGAAAGGCATCATCAATGCAGGCTCACAAGTTCAAATATGTTGCATGATTTTGTAGTTTGA 1647 45.42 MTYFPSLSNLRDSMLGDQKLGSSCQEQPLCSGNLMMFMNHQDPSCRDYSDIFSGVSSNYVDESVGDHRSNCEMDLNSHLVGILDDSNFQCQGVSLSLSTHSPSVVSMPSFPPLYQTPAMASSFFNAPPSIFEKRSNSKLCMSDAKNGMYMAAGSGNSMSNSIYIEAAQQLLDEMVSVREALKEIKSKKLKGSNGLCVDSCRENDGGSSNDLMCSDVRESSMANPSGDLSPTERQDLKNKNSKLLSLLGEVDRRYKQYYQQLQFLASSFDMVAGRGAAEFYTALAHRTISCHFRRLRDAINAQIEVTRRALGEQDASHYGQEGIPRLRFVDQQLRQQRALQQLGVTPHSWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKLKLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSNMDIKSSSPENNASKASWNNSLFSEDRGGDKLHDSTKSAANNGERVLYRSCSTDDMIKSSNFSVGGDISLALELKHCEGDEFGMFGSNSRMVGSVELEAQDFPCLEPERHHQCRLTSSNMLHDFVV 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 73054695 73057632 + Hsped.03g16150.1 Hepe03g1615 566613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1615 548 CDD homeodomain 349 410 IPR001356 GO:0003677(InterPro)
Hepe03g1615 548 Pfam Associated with HOX 159 299 IPR006563 -
Hepe03g1615 548 SUPERFAMILY Homeodomain-like 350 417 IPR009057 -
Hepe03g1615 548 SMART HOX_1 349 413 IPR001356 GO:0003677(InterPro)
Hepe03g1615 548 SMART prehox3 152 301 IPR006563 -
Hepe03g1615 548 MobiDBLite consensus disorder prediction 424 442 - -
Hepe03g1615 548 Coils Coil 164 187 - -
Hepe03g1615 548 ProSiteProfiles 'Homeobox' domain profile. 346 409 IPR001356 GO:0003677(InterPro)
Hepe03g1615 548 Pfam Homeobox KN domain 366 405 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe03g1615 548 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 115 441 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe03g1615 548 MobiDBLite consensus disorder prediction 422 442 - -
Hepe03g1615 548 Gene3D - 346 423 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1615 Hepe-Chr3:73054695 Hepe08g0990 Hepe-Chr8:9375544 8.52e-103 dispersed
Hepe03g1615 Hepe-Chr3:73054695 Hepe05g0443 Hepe-Chr5:5748508 1.12e-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55303 PF07526 POX 1.90E-39 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1615 - - - 0.0