Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1655 ATGAATCTTCTTGGTATTTTACTTCCCATGTGGGTTTTCTATTCCTTCTTCCCAATAATTGATGCCAGACCAGAGCTTGCTGGGTTTGCTGGGTTTTCAATTCCCAGGACTGTTTTTTCTCCTCAGAAAAAACCCATTTCCCTCATTGTTTCCAAAATGGAAGCTCAATCCCCAGGAGTTGTTACAGAGGTTAGAGTAGTTCACCACCAAGATTTGAACAAGAGAATTCTTATTGCATTGATTGTTTCTTCCACTCTCCTTGGAGTTGTACTGCTGTTCCTTTTGTGTTATTGGATATTTCGTCGAAAAACGTTGAAGCTTGATGATGGAGAATGTCAAAAGAATTTGGAGACTTCGAAAGGGATGACGATAAATCCGATCATATCCAGATTTAACTCCTTGAGGTTGGCTAATTTTAAAGGTTTGGTTTCCACCATTGATTATAAACTGTTGGAAGCAGCGACTGACAGCTTCAGCAAAAGCAATGTTTTGGGGGAAGGTGGTACGGGGCATGTTTACAAAGCTCGATTCAATGATAAAATGCTGGCAGCTGTGAAGAGAATCGACAATGGAGGACCGGATGTCGAAAGAGAATTTGAGAATGAGGTGAACTGGTTGTGTAAAATACGACATCAAAATGTAATCAAACTCTTGGGACATTGCATTCATGGCGAAACACGGTTTCTTGTTTACGAGATGATGCAGAATGGATCTTTAGAGTCTCAATTGCACGGACCTTCGCACGGATCAGCTTTAACTTGGCATCTCCGAATGAAGATCGCCGTCGATGTTGCGAGAGGATTGGAGTATCTTCACGAGCACCGAAATCCTCCTGTGGTTCATCGAGACTTGAAATCGTCGAATATCCTTCTAGATTCAGACTTTAATGCCAAGCTCTCTGACTTTGGCCTTACTGTAAACTTGGGAGCTCAAAATAAAAACATAAAGCTCTCTGGAACTTTGGGTTATGTCGCCCCGGAATACCTTTTAGACGGTAAACTAACAGATAAAAGCGATGTCTATGCTTTTGGAGTCGTTCTTTTGGAGCTTCTGACCGGGAAAAAGCCTGTCGAGAAGATGGGACCTACTCAATCCCAATCTCTAGTTTCATGGGCAATCCCGCAGCTTAGCGACAGATCAAAGCTACCGAAGATTGTCGATCCTGTGATAAAGGACACGATGGATTTGAAGCACTTATATCAAGTTGCTGCTGTAGCTGTGTTATGTGTACAATCAGAACCGAGCTATCGACCGTTAGTTACCGACGTTCTGCATTCCCTCATTCCTCTTGTACCTGTAGAGCTTGGAGGATCACTGAGAATTACAGAACCGTTGCATCCGAAAGTGCCTTCGTCGACCCACTAA 1365 42.93 MNLLGILLPMWVFYSFFPIIDARPELAGFAGFSIPRTVFSPQKKPISLIVSKMEAQSPGVVTEVRVVHHQDLNKRILIALIVSSTLLGVVLLFLLCYWIFRRKTLKLDDGECQKNLETSKGMTINPIISRFNSLRLANFKGLVSTIDYKLLEAATDSFSKSNVLGEGGTGHVYKARFNDKMLAAVKRIDNGGPDVEREFENEVNWLCKIRHQNVIKLLGHCIHGETRFLVYEMMQNGSLESQLHGPSHGSALTWHLRMKIAVDVARGLEYLHEHRNPPVVHRDLKSSNILLDSDFNAKLSDFGLTVNLGAQNKNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLTGKKPVEKMGPTQSQSLVSWAIPQLSDRSKLPKIVDPVIKDTMDLKHLYQVAAVAVLCVQSEPSYRPLVTDVLHSLIPLVPVELGGSLRITEPLHPKVPSSTH 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 73408316 73411435 + Hsped.03g16550.1 Hepe03g1655 566653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1655 454 ProSiteProfiles Protein kinase domain profile. 158 428 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g1655 454 SUPERFAMILY Protein kinase-like (PK-like) 136 427 IPR011009 -
Hepe03g1655 454 PANTHER OS01G0750732 PROTEIN 63 431 IPR050885 -
Hepe03g1655 454 ProSitePatterns Protein kinases ATP-binding region signature. 164 186 IPR017441 GO:0005524(InterPro)
Hepe03g1655 454 ProSitePatterns Serine/Threonine protein kinases active-site signature. 279 291 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe03g1655 454 FunFam Protein kinase superfamily protein 125 233 - -
Hepe03g1655 454 CDD STKc_IRAK 164 430 - -
Hepe03g1655 454 Pfam Protein tyrosine and serine/threonine kinase 161 386 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe03g1655 454 SMART serkin_6 158 428 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe03g1655 454 Gene3D Transferase(Phosphotransferase) domain 1 234 432 - -
Hepe03g1655 454 Gene3D Phosphorylase Kinase; domain 1 122 233 - -
Hepe03g1655 454 FunFam probable receptor-like protein kinase At1g80640 234 432 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1655 Hepe-Chr3:73408316 Hepe09g1833 Hepe-Chr9:58375293 1.94e-87 dispersed
Hepe10g0230 Hepe-Chr10:2432494 Hepe03g1655 Hepe-Chr3:73408316 2.41e-154 wgd
Hepe02g1339 Hepe-Chr2:16921931 Hepe03g1655 Hepe-Chr3:73408316 5.58e-72 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72679 PF07714 PK_Tyr_Ser-Thr 3.70E-47 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1655 - - - 0.0