Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1656 ATGGCCCGACCTCAACAACGCTATCGCGGTGTTCGCCAACGACATTGGGGCTCTTGGGTCTCCGAAATTCGCCACCCTCTGTTGAAGACAAGAATATGGTTGGGAACGTTCGAAACGGCGGAGGATGCAGCCCGAGCCTACGACGAGGCGGCGCGGCTGATGTGCGGTCCGAAAGCGCGTACCAACTTCCAATTCAATCCAAACGATCAACAATCATCTTCTTCCTCCTCCTCCTCGTCCAAGCTTCTCTCGGCGGCGCTGATAGCGAAATTACACAAATGTCATTTAGCCTCACTCCAAATCGCCAAAAAACACATCCACAAACAACAACACCCCGGATTCGAGCCGAACTACGTCGCATATGGCAGCTCCTCACCGAGCATGGCCGGAACCACCACTGGCCGGTGGCCGCCGGAAGAAACATGGGTCTACTCCGACGAACCCCAAATGGAGATGAATAATTATAATAACAATAACAACAACATTCATCATCAGCAATGCCTTCAGCCTCTTGAAGAAGATCATATTGAACAAATGATACATGAGCTGCTAGACCTCGGATCATTCGAAATTATTACATAA 582 50.17 MARPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPKARTNFQFNPNDQQSSSSSSSSSKLLSAALIAKLHKCHLASLQIAKKHIHKQQHPGFEPNYVAYGSSSPSMAGTTTGRWPPEETWVYSDEPQMEMNNYNNNNNNIHHQQCLQPLEEDHIEQMIHELLDLGSFEIIT 193
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 73419690 73420470 - Hsped.03g16560.1 Hepe03g1656 566654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1656 193 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1656 193 Pfam AP2 domain 7 56 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1656 193 CDD AP2 6 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1656 193 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 7 169 - -
Hepe03g1656 193 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Hepe03g1656 193 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1656 193 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1656 193 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1656 193 SMART rav1_2 7 70 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1656 193 SUPERFAMILY DNA-binding domain 7 65 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1656 Hepe-Chr3:73419690 Hepe10g0227 Hepe-Chr10:2410480 2.51e-53 dispersed
Hepe01g1984 Hepe-Chr1:84647565 Hepe03g1656 Hepe-Chr3:73419690 3.47e-44 wgd
Hepe10g0226 Hepe-Chr10:2400040 Hepe03g1656 Hepe-Chr3:73419690 1.74e-51 wgd
Hepe02g1311 Hepe-Chr2:16630495 Hepe03g1656 Hepe-Chr3:73419690 1.05e-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55305 PF00847 AP2 8.20E-12 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1656 - - - 0.0