Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1679 ATGATCGGTGACAAGAAAGCGATCATACCTCGCCAATCTTCCTATAATTCTCTGTATGTGAATCCCCTTACTGACCTCAGGCACAACCGTAGCTGCAGCGACGGCGGACGGCTGACCAGAGGCGGCGACGCCCATGACGGCGGATTCCGGCAAGGTAAAGAAAACTCGACGCCCAATACGAAGGAAAAACAGAGCGATGAAAATGGAGTGTTTTGCGACAAAGAAAATGCGATTCCCAATAATGGGTCTTCAGCTAAATCGAAGAAATTTGGAGATTTGAAGTCATTTTCGAGTGGGAAGGCTTTGAAATCTTCGTCTCTTCATCAGTGTATGCAGATGAATGAGGCCGACAAGGTTTTTGCGTCGAAATTGTGGGATGGAACTGATTCCGAACATTCCAGTTCGTTGAAGATTTGGGACTTTTCGGATTCGGAAGCTGCTCCAGCTTCCTCATGGTCCACACTGCCAAACAGGTCATTGTTGTGTAGGCCATTGCCTGTGGATGTGGGGAGATGTACTTGTGTCATTGTGAAGGAAAAATCACCAGATGGGCTTCATGGTGGTGCTTTCTATTCTCTATACACCAATGAAGGGAAGGGACGGCAGGACCGGAAGTTGGCGGTGGCTCGCCATCAACGACGGAACGGGAGGTCGGAGTATAAAATAGCTCAGAGTACAAGAGGGATATTGTGCAATGCAGATGATAGTTTTGTTGGATGCATGACTACAAACCTTGTTGGTTCAAAATATCATATATGGGATCAGGGGAGCCGTCTGAAATCGATCCCGAGCCAGTCGAAATCGCTTCTCGCTGCTGTAACATTCATGCCTACAATAACCACTTGGACAGGCAGTCATAGAAGTATGAAGGCTTTCATCCCCAAGCATCAATCAATGCAGCTGAAAAACACCAATCAGGTGCAGCACATAGCAGGGCTGCCAAGGGAGTGGGAGGAAGAAAAGACCAAAGTCCACCAACTTGTTTCTAAAGTTCCTCAATACAACAAGATTTCTAAGCAATATGAGTTGGACTTCAGAGACAGAGGAAGGGCAGTTTCAGGTCTTATGATCCAAAGCTCTGTGAAGAATTTTCAGTTAACTTTAGAGGAAAATGGGAAGCAAACAATTCTCCAACTTGGAAGGATTGGGAAGTCTAAGTATGTGATGGATTATAGATATCCATTGACAGGTTACCAAGCATTTTGCATATGCCTGGCTTCCATTGATTCAAAGCTTTGCTGCTCAGTATGA 1251 45.72 MIGDKKAIIPRQSSYNSLYVNPLTDLRHNRSCSDGGRLTRGGDAHDGGFRQGKENSTPNTKEKQSDENGVFCDKENAIPNNGSSAKSKKFGDLKSFSSGKALKSSSLHQCMQMNEADKVFASKLWDGTDSEHSSSLKIWDFSDSEAAPASSWSTLPNRSLLCRPLPVDVGRCTCVIVKEKSPDGLHGGAFYSLYTNEGKGRQDRKLAVARHQRRNGRSEYKIAQSTRGILCNADDSFVGCMTTNLVGSKYHIWDQGSRLKSIPSQSKSLLAAVTFMPTITTWTGSHRSMKAFIPKHQSMQLKNTNQVQHIAGLPREWEEEKTKVHQLVSKVPQYNKISKQYELDFRDRGRAVSGLMIQSSVKNFQLTLEENGKQTILQLGRIGKSKYVMDYRYPLTGYQAFCICLASIDSKLCCSV 416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 73621763 73626015 + Hsped.03g16790.1 Hepe03g1679 566677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1679 416 SUPERFAMILY Tubby C-terminal domain-like 149 414 IPR025659 -
Hepe03g1679 416 MobiDBLite consensus disorder prediction 30 70 - -
Hepe03g1679 416 PANTHER TUBBY-RELATED 86 414 - -
Hepe03g1679 416 MobiDBLite consensus disorder prediction 29 86 - -
Hepe03g1679 416 PRINTS Tubby superfamily signature 372 391 IPR000007 -
Hepe03g1679 416 PRINTS Tubby superfamily signature 352 368 IPR000007 -
Hepe03g1679 416 PRINTS Tubby superfamily signature 237 261 IPR000007 -
Hepe03g1679 416 PRINTS Tubby superfamily signature 393 415 IPR000007 -
Hepe03g1679 416 Gene3D Tubby Protein; Chain A 154 415 IPR025659 -
Hepe03g1679 416 Pfam Tub family 161 410 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1679 Hepe-Chr3:73621763 Hepe07g0976 Hepe-Chr7:13300191 4.58e-12 dispersed
Hepe03g1679 Hepe-Chr3:73621763 Hepe05g1485 Hepe-Chr5:64291328 1.45e-11 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55307 PF01167 Tub 3.90E-46 CL0395 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1679 K19600 - csv:101216780 739.184