Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1680 ATGGCGAAAATCTCACCTCCACCGCACAAGGATTCCATTTCCCCCACCGCCGATGATCCTCTCTCTTCTCCAATTCATCAGAGAAAAGTACTCAAGCGCACGCGTAAGTCCGCTCCTCGAGATTCTCCCGCTCAACGCAGCTCTGTATACCGCGGCGTCACCAGACATAGATGGACGGGACGGTATGAGGCGCATTTATGGGATAAGAATTGCTGGAACGAAGGACAGAATAAGAAAGGAAGACAAGTGTATTTAGGAGCGTATGATGATGAAGAAGCAGCGGCTCATGCTTACGATCTTGCAGCGCTCAAGTACTGGGGAACTGAAACTGTTCTTAACTTTCCACTATTATCGTACCAAGACGAGATTAAAGAAATGGAAGGTCAATCAAGAGAAGAATATATTGGATATTTGAGAAGGAAGAGTAGCGGCTTTTCTCGCGGGGTTTCAAAGTATAGAGGTGTAGCAAGGCACCATCATAATGGAAGATGGGAAGCTCGAATTGGCCGAGTGTTTGGTAACAAGTATCTTTACCTTGGAACATACGCTACCCAAGAAGAAGCTGCCACAGCTTACGACATGGCGGCCATAGAATACCGTGGCCTTAATGCCGTTACAAATTTCGACCTCAGTCGTTACATCAAATGCCTCCGTCCTGGTGAACAGAATATCCCAAACAATAACGTCTGTCCACCAAACTCTAACGCCGGTGAAACTACTTCAGAATGTTCGAGCTCCGGCCAACCCGCCACCGTGCCACCGCCGGAAACTGACAGCGGTGACTCCTCATCGGCGGCGGCGCTAGAGCTCATACTCCATCCGTCAAAATTCAAAGATATAATAGAAAGAACATCGGTCGCGGAGGCTTCTTCACAGACGTCGTCAGAATCTGACCGTCCGCGGCGCTGTATTCCCGACGACATTCAAACTTACTTCGATTGTACTCAAGATTCCGGCGACATTGCCGAAAGTGACGACAGCATTTTCGGGTACCTAAATTCGTTTTTTCCTAATTCGTCAGTTTTTCACTGCGAACTCGATGCTTAA 1047 48.04 MAKISPPPHKDSISPTADDPLSSPIHQRKVLKRTRKSAPRDSPAQRSSVYRGVTRHRWTGRYEAHLWDKNCWNEGQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGTETVLNFPLLSYQDEIKEMEGQSREEYIGYLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKCLRPGEQNIPNNNVCPPNSNAGETTSECSSSGQPATVPPPETDSGDSSSAAALELILHPSKFKDIIERTSVAEASSQTSSESDRPRRCIPDDIQTYFDCTQDSGDIAESDDSIFGYLNSFFPNSSVFHCELDA 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 73627979 73633144 - Hsped.03g16800.1 Hepe03g1680 566678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1680 348 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 37 242 - -
Hepe03g1680 348 SUPERFAMILY DNA-binding domain 150 211 IPR016177 GO:0003677(InterPro)
Hepe03g1680 348 CDD AP2 150 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1680 348 ProSiteProfiles AP2/ERF domain profile. 49 115 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1680 348 FunFam AP2-like ethylene-responsive transcription factor 48 117 - -
Hepe03g1680 348 FunFam AP2-like ethylene-responsive transcription factor 150 211 - -
Hepe03g1680 348 ProSiteProfiles AP2/ERF domain profile. 151 209 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1680 348 PRINTS Ethylene responsive element binding protein signature 191 211 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1680 348 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1680 348 Gene3D AP2/ERF domain 150 211 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1680 348 Gene3D AP2/ERF domain 49 117 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1680 348 MobiDBLite consensus disorder prediction 224 263 - -
Hepe03g1680 348 MobiDBLite consensus disorder prediction 1 50 - -
Hepe03g1680 348 SMART rav1_2 49 121 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1680 348 SMART rav1_2 151 215 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1680 348 Pfam AP2 domain 48 107 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1680 348 Pfam AP2 domain 150 201 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe03g1680 348 SUPERFAMILY DNA-binding domain 48 116 IPR016177 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1680 Hepe-Chr3:73627979 Hepe09g0546 Hepe-Chr9:5155113 4.53e-137 dispersed
Hepe03g1680 Hepe-Chr3:73627979 Hepe08g1600 Hepe-Chr8:23033301 9.28e-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55308 PF00847 AP2 2.20E-13 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1680 K09285 - csv:101206499 563.148