Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1690 ATGGCCGCTGAATCAAACCAAACAAACGAATTCATTTTCCGTTCAAAGCTTCCCGATATTCAAATTCCCAATCATCTTCCACTCCACGAATATCTTTTCCAGAACAATGCCCAATTCGGCTCACGTCCCTGTTTGATCAACGGCGCCACCGGCGATGTTTATTCATTCGACGACGTTCAGTTAACGGCCCGCCGAGTCGCCACTGGCCTCCACAACCTCGGAATTAAGAAGGGCGATGTCATCATGAATTTGCTTCCCAACTCGCCGGAATTCGTCTTCACCTTCATCGCTGCGTCGTATCGAGGCGCCATCATGACAGCGGCGAACCCATTTTACACGGCGGTGGAAATCGCCAAACAGGCCAAAGCCGCCAATGTGAAGTTGATTGTAACGATGGCTTGTTTTTATGATCGGGTTAAGGATTTGGCTGAAAATGGAGTCAAAATAGTGTGTGTTGATTTTGCCGTTGAGGGTTGTTTGCATTTCTCTGTTTTGAGTGGGGCGGATGAATCCCACGCGCCTCCGGTGGATTTTGTCCCCGATGATGTGGTGGCGCTGCCATACTCCTCCGGCACCACCGGTTTGCCGAAGGGTGTTATGTTGACTCATCGAGGTTTAATCACCAGCGTTGCTCAACAAATTGACGGCGAAAATCCGAACCTTTATTATCATAGTGGTGACGTCATCCTCTGTGTGTTGCCGTTTTTTCATATTTATTCTCTCAATTCGATTTTGCTGTGTGGGCTACGCGCCGGCGCTGCGATTTTGATAATGCCGAAATTCAATATCGCTTCACTTTTGAAATTGGTTGAGAAATACAGAGTTTCGATCATGCCAATTGTGCCGCCAATATTTTTGGCCATTGCTAAATCGCCGGATTTTGAGAAATATGACGTGTCCTCGGTGAGGGTTTTGAAATCTGGCGGAGCGCCATTGGGGAAAGAGTTGGAAGACGCCGTGAAAACAAAATTTCCAACGGCCGTTCTCGGGCAGGGGTATGGAATGACCGAGGCCGGTCCGGTTCTTACCATGAGTTTGGCTTTTGCGAAAGAACCGTTTCCAGTAAAAGCTGGAGCTTGTGGGACGGTGGTCCGAAATGCTGAGATGAAGATTGTCGACCCAGAAACGGGCGCCTCGTTGCCGACAAATTCTGCCGGAGAGATTTGTATTAGAGGGTATCAGATCATGAAGGGCTATTTGAATGATTTGGAGTCTACCAAGAGAACCATTGATAAAGAAGGATGGCTTCACACTGGCGACATTGGCTTCATCGACGATGACGATGAGCTCTTCATTGTCGATCGTCTTAAGGAACTTATAAAATTCAAGGCGTTTCAGGTGGCGCCCGCCGAGCTCGAGTCCCTCCTTATTACTCATCCTAAACTCTCGGACGCAGCTGTGATTGGTATGCCGGACGAGGAGGCCGGAGAAGTGCCAGTGGCGTTTGTGGTGAAGACGAACGGCGGTGCGATCACCGAAGAAGATGTAAAGCAATTCATATCAAAACAAGTGGTGTTCTACAAGAGGCTAAAAAGAGTGTTTTTTGTGAAAGCAATTCCAAAGGCTCCATCAGGCAAAATCCTTAGAAAAGAACTTAGAGCAAAACTGGCTTCTGGTGTTTACAACAATTAA 1632 47.79 MAAESNQTNEFIFRSKLPDIQIPNHLPLHEYLFQNNAQFGSRPCLINGATGDVYSFDDVQLTARRVATGLHNLGIKKGDVIMNLLPNSPEFVFTFIAASYRGAIMTAANPFYTAVEIAKQAKAANVKLIVTMACFYDRVKDLAENGVKIVCVDFAVEGCLHFSVLSGADESHAPPVDFVPDDVVALPYSSGTTGLPKGVMLTHRGLITSVAQQIDGENPNLYYHSGDVILCVLPFFHIYSLNSILLCGLRAGAAILIMPKFNIASLLKLVEKYRVSIMPIVPPIFLAIAKSPDFEKYDVSSVRVLKSGGAPLGKELEDAVKTKFPTAVLGQGYGMTEAGPVLTMSLAFAKEPFPVKAGACGTVVRNAEMKIVDPETGASLPTNSAGEICIRGYQIMKGYLNDLESTKRTIDKEGWLHTGDIGFIDDDDELFIVDRLKELIKFKAFQVAPAELESLLITHPKLSDAAVIGMPDEEAGEVPVAFVVKTNGGAITEEDVKQFISKQVVFYKRLKRVFFVKAIPKAPSGKILRKELRAKLASGVYNN 543
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 73737309 73739284 + Hsped.03g16900.1 Hepe03g1690 566688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1690 543 FunFam Long-chain-fatty-acid--CoA ligase FadD 14 437 - -
Hepe03g1690 543 CDD 4CL 22 532 - -
Hepe03g1690 543 Gene3D - 5 436 IPR042099 -
Hepe03g1690 543 Gene3D - 437 539 IPR045851 -
Hepe03g1690 543 SUPERFAMILY Acetyl-CoA synthetase-like 11 538 - -
Hepe03g1690 543 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 7 533 - GO:0016405(PANTHER)
Hepe03g1690 543 Pfam AMP-binding enzyme 34 400 IPR000873 -
Hepe03g1690 543 ProSitePatterns Putative AMP-binding domain signature. 186 197 IPR020845 -
Hepe03g1690 543 Pfam AMP-binding enzyme C-terminal domain 451 526 IPR025110 -
Hepe03g1690 543 FunFam 4-coumarate--CoA ligase 2 438 539 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1690 Hepe-Chr3:73737309 Hepe08g2161 Hepe-Chr8:60864587 3.28e-253 dispersed
Hepe10g1506 Hepe-Chr10:51833254 Hepe03g1690 Hepe-Chr3:73737309 5.27e-131 transposed
Hepe02g1279 Hepe-Chr2:15978600 Hepe03g1690 Hepe-Chr3:73737309 4.48e-244 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1690 K01904 - csv:101218121 969.148