Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1738 ATGACAGACCCTAATTACTCAAATTTCTTCTCTCCCAATTCCTTCAACTTCATCCCTCTTCCTTCAAATTTCCCCTTTTCCCAATGCCGCCCTCCTCCTCCGCCGCCGCCGCCCTCTCCGCCGCAAGCTCTCCCTCTCCTCAACACCCTCTCACCGGAAACCGCCGATCAACCCTCCTCCAGCTGCCTAGATGACGAAACTACCCTCGCCCTCGACTTCAGCCTCTCTTGCCCTAGCTCCGATCTCGACTACTCCCGTTCCTTCTCGCCAGACCCCACCGGGAAAATCCTCGACGGCCACATCTCCGGCCACCCTTTACCGATCTCCGGCAAGGGTCAGTTCTGGATTCCGACCCCATCTCAGATCCTCATCGGTCCCACTCAGTTCTCTTGCCCTCTTTGCTCTAAAGCCTTCAATAGATACAATAATCTTCAGATGCATATGTGGGGGCATGGTTCTCAATATAGAAAAGGACCAGAGTCCCTAAAAGGAACCCAACCAACTGCAATGCTACGGCTACCGTGCTATTGCTGCGCGTCGGGGTGCAAACACAACATCGATAACCCGAGGTCGCGACCGCTCAAGGACTTCCGCACCCTCCAAACGCATTACAAGCGAAAGCACGGCATCAAGCCCTTCACCTGTAGAAAATGCAGCAAAGCCTTCGCCGTGAAAGGCGATTGGCGAACGCACGAGAAGAACTGCGGCAAGATTTGGTATTGTTTTTGTGGCTCTGACTTTAAACACAAGCGCTCGCTCAAGGACCACATCAAGGCCTTTGGACGCGGCCATGGTGCCCTCGGCCTTGACTACTTTGAGGATGACAATGAACCCGCATCCGAAGTCGAACACGAAGGCGGCGCCATCCCTTGA 873 54.41 MTDPNYSNFFSPNSFNFIPLPSNFPFSQCRPPPPPPPPSPPQALPLLNTLSPETADQPSSSCLDDETTLALDFSLSCPSSDLDYSRSFSPDPTGKILDGHISGHPLPISGKGQFWIPTPSQILIGPTQFSCPLCSKAFNRYNNLQMHMWGHGSQYRKGPESLKGTQPTAMLRLPCYCCASGCKHNIDNPRSRPLKDFRTLQTHYKRKHGIKPFTCRKCSKAFAVKGDWRTHEKNCGKIWYCFCGSDFKHKRSLKDHIKAFGRGHGALGLDYFEDDNEPASEVEHEGGAIP 290
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 74252542 74254838 - Hsped.03g17380.1 Hepe03g1738 566736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1738 290 ProSitePatterns Zinc finger C2H2 type domain signature. 131 151 IPR013087 -
Hepe03g1738 290 FunFam Zinc finger protein WIP2 182 264 - -
Hepe03g1738 290 SMART c2h2final6 213 233 IPR013087 -
Hepe03g1738 290 SMART c2h2final6 129 151 IPR013087 -
Hepe03g1738 290 Gene3D Classic Zinc Finger 128 151 - -
Hepe03g1738 290 Gene3D Classic Zinc Finger 172 261 - -
Hepe03g1738 290 MobiDBLite consensus disorder prediction 26 45 - -
Hepe03g1738 290 SUPERFAMILY beta-beta-alpha zinc fingers 196 233 IPR036236 -
Hepe03g1738 290 PANTHER ZINC FINGER PROTEIN WIP2 111 285 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Hepe03g1738 290 ProSiteProfiles Zinc finger C2H2 type domain profile. 129 156 IPR013087 -
Hepe03g1738 290 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 212 236 - -
Hepe03g1738 290 MobiDBLite consensus disorder prediction 46 63 - -
Hepe03g1738 290 MobiDBLite consensus disorder prediction 26 63 - -
Hepe03g1738 290 SUPERFAMILY beta-beta-alpha zinc fingers 121 151 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1738 Hepe-Chr3:74252542 Hepe04g0273 Hepe-Chr4:46967259 2.42e-113 dispersed
Hepe03g1738 Hepe-Chr3:74252542 Hepe05g0565 Hepe-Chr5:7947960 1.31e-108 wgd
Hepe03g1738 Hepe-Chr3:74252542 Hepe08g0113 Hepe-Chr8:959454 6.31e-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55314 PF00096 zf-C2H2 0.0015 CL0361 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1738 - - - 0.0