Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1868 ATGGCGACGACTAGGAGCATCTATCGCATCACGTTGTTGTGGAGCTTATTGGGTCGCCTCATACTCGAGCAAAAAGTTTCTTGCCCAAGTGTTTGGGCCATCAAACGAGCGGTGGAGGATGGTGGCGGTTGGGAACATCTACTACATCACGTTGTTGTGGAGCTTGTTGGGTCACCTCATACTCGAGCAAAAAGTTTCTCGCCCACGTGTTTGAGCCATCCTCTCTACTCTCTGAATTCTTGTTTCAATCGTCGGCCGTTGTTTTCTATGGCGACGAGGAATCGCACCGCGCAGTTCAGAAGGCACAGGGACGCCGTGAAGAGCGTCCGTGCGCCTTTATCTTCCTCGGCAGCTGGTTCGAGCGGGCCGATTATTGAGATGGTGAGTTCGTCTCTTCTTCGTTCAAAGCGCTCTTCTTCTTACGCTCCTCTTAACACTGAAGATCCAGGACCTTCGAGCAGTGATGCATTTAGGGTGGGTCTACCTCCAGCTTGGGTGGATGATACTGAAGAAATAACGGTTAATATACAGAAAATTCGTAGGAAGATGGCGGAGTTAGTCAAAGCTCATTCTAAAGCTTTAATGCCTTCTTTTGCTGATGGCAAAGAAGATCAGCATACAATTGAGGCACTTACGCAAGAAATTACCAATCTTTTGAAAACCTCTGAAAAGAAGTTGAAGAAAATTTCTAGTACTGGGTCCTCAGAAGATATTAACATTAGAAAAAATGTCCAGCGTTCTCTTGCTACAGAGCTTCAAAATCTTTCTATGGATCTTCGTAGAAGACAGTCAATGTATCTGAAACGTCTGCAGCAGCAAACGGAGGGACATGATGGAATTGATCTGGAGATAAATTTGAATGGAAACAAAACTCTACAGGAGGATGACGGATTTGATGGATTTGGAACTAATGAAAACCAAATGATGACATTTGGAATGGATAAGCAGCACTTCCAGGGAAGGGAGAAAGAGATTACACAGGTTGTGAAATCAGTGGATGAGCTCGCGCAAATTATGAAGGATCTCTCAACCCTTGTTATAGATCAGGGTACCATTGTCGATAGAATTGACCACAATATTCAGAATGTTGCTGTTTCAGTTGAAGAGGGCTTTAAACAGCTTCAGAAGGCAGAGAAGTCTCAGAAGAATGGAGGAATGGTGAAGTGTGCAACGGTGCTTGTTGTTATGTGTTTCTTAATGCTGGTTCTGTTGATACTTAAGGAGATAATTATGTAA 1236 44.09 MATTRSIYRITLLWSLLGRLILEQKVSCPSVWAIKRAVEDGGGWEHLLHHVVVELVGSPHTRAKSFSPTCLSHPLYSLNSCFNRRPLFSMATRNRTAQFRRHRDAVKSVRAPLSSSAAGSSGPIIEMVSSSLLRSKRSSSYAPLNTEDPGPSSSDAFRVGLPPAWVDDTEEITVNIQKIRRKMAELVKAHSKALMPSFADGKEDQHTIEALTQEITNLLKTSEKKLKKISSTGSSEDINIRKNVQRSLATELQNLSMDLRRRQSMYLKRLQQQTEGHDGIDLEINLNGNKTLQEDDGFDGFGTNENQMMTFGMDKQHFQGREKEITQVVKSVDELAQIMKDLSTLVIDQGTIVDRIDHNIQNVAVSVEEGFKQLQKAEKSQKNGGMVKCATVLVVMCFLMLVLLILKEIIM 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 75673683 75680289 - Hsped.03g18680.1 Hepe03g1868 566866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1868 411 FunFam Syntaxin-43 162 369 - -
Hepe03g1868 411 Pfam SNARE domain 351 403 IPR000727 -
Hepe03g1868 411 CDD SNARE_syntaxin16 321 376 - -
Hepe03g1868 411 Gene3D - 162 369 - -
Hepe03g1868 411 PANTHER SYNTAXIN 172 396 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Hepe03g1868 411 Coils Coil 208 228 - -
Hepe03g1868 411 ProSitePatterns Syntaxin / epimorphin family signature. 321 360 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Hepe03g1868 411 SMART tSNARE_6 310 377 IPR000727 -
Hepe03g1868 411 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 315 377 IPR000727 -
Hepe03g1868 411 SUPERFAMILY t-snare proteins 161 370 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Hepe03g1868 411 SMART SynN_4 156 271 IPR006011 GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1868 Hepe-Chr3:75673683 Hepe08g2281 Hepe-Chr8:62520491 2.00e-126 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1868 K08489 - csv:101204192 555.829