Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1870 ATGGCTACCGGTTCTCATGCTCCTACTCCCAGGGGTCTTCTCTGTAATGCTGGAGCTGGTGCTGCTGCTGGAGTTCTTGCTGCTACGTTTGTATGCCCTTTGGATGTTATCAAGACTAGATTTCAGGTTCATGGACTGCCAAAGATTGAAGGGAGTCTTATAGTTGGTAGTCTAAAACAAATTGCTCATAAGGAGGGGTTACGTGGAATGTACAGAGGACTCTCACCTACTGTGCTTGCATTACTTCCTAACTGGGCTGTTTATTTCACAATCTATGGGCAGCTTAAAAGCTTTCTTTGCTCTGATGATAAAAACCATCAGCTTTCTATAGGTGCTAATATGTTGGCTGCTTCTGGTGCTGGGGCTGCTACAACTATTGCAACTAATCCTCTATGGGTAGTTAAGACCAGACTTCAGACGCAGGGAATGAAATCTGGTGTGCTACCGTATAGAAATACAGTGTCTGCCTTGAGGAGAATAGCCTTGGAAGAAGGCATCCGTGGATTGTACAGGTTCTCTCTTTCTTATCATGTTGCCATTCTGATCTATGTATTTTATATGGAGAAAACGATTGCAATGATTATTGGCTCATCTGTAACACTTGATACCGTGTTCTACAGTGGTCTTGTGCCTGCTTTGGCTGGTGTAAGTCACGTCGCGATCCAGTTTCCAACATACGAGAAAATAAAAAGTTATTTGGTTAGAAGAGATAATAGGACGACGGATAAACTCAACGCACGTGATGTAGCGGTTGCCTCGTCTGTCTCCAAGATTTTTGCTTCCACATTGACCTATCCACATGAGGTTGTACGTTCCAGGCTTCAGGAACAAGGGTTTCACTCCGAGAAGCGTTATTCTGGCGTAACCGATTGCGTGAAGAAAGTATTTCAGCAAGATGGTATCCCTGGTTTCTATCGAGGGTGCGCAACCAACCTTCTTAGGACGACGCCTGCAGCTGTCATCACATTTACCAGCTTTGAAATGATTCACCGTTTTCTTGTCAACTTATTTCCTCCCGATCCGCATCCACACACATTATGA 1041 44.38 MATGSHAPTPRGLLCNAGAGAAAGVLAATFVCPLDVIKTRFQVHGLPKIEGSLIVGSLKQIAHKEGLRGMYRGLSPTVLALLPNWAVYFTIYGQLKSFLCSDDKNHQLSIGANMLAASGAGAATTIATNPLWVVKTRLQTQGMKSGVLPYRNTVSALRRIALEEGIRGLYRFSLSYHVAILIYVFYMEKTIAMIIGSSVTLDTVFYSGLVPALAGVSHVAIQFPTYEKIKSYLVRRDNRTTDKLNARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGFHSEKRYSGVTDCVKKVFQQDGIPGFYRGCATNLLRTTPAAVITFTSFEMIHRFLVNLFPPDPHPHTL 346
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 75697492 75703574 + Hsped.03g18700.1 Hepe03g1870 566868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1870 346 Gene3D Mitochondrial carrier domain 203 335 IPR023395 -
Hepe03g1870 346 PRINTS Mitochondrial carrier protein signature 253 275 IPR002067 GO:0055085(InterPro)
Hepe03g1870 346 PRINTS Mitochondrial carrier protein signature 123 141 IPR002067 GO:0055085(InterPro)
Hepe03g1870 346 PRINTS Mitochondrial carrier protein signature 73 93 IPR002067 GO:0055085(InterPro)
Hepe03g1870 346 PRINTS Mitochondrial carrier protein signature 16 29 IPR002067 GO:0055085(InterPro)
Hepe03g1870 346 PRINTS Mitochondrial carrier protein signature 29 43 IPR002067 GO:0055085(InterPro)
Hepe03g1870 346 ProSiteProfiles Solute carrier (Solcar) repeat profile. 11 98 IPR018108 -
Hepe03g1870 346 Gene3D Mitochondrial carrier domain 2 194 IPR023395 -
Hepe03g1870 346 ProSiteProfiles Solute carrier (Solcar) repeat profile. 108 197 IPR018108 -
Hepe03g1870 346 Pfam Mitochondrial carrier protein 15 101 IPR018108 -
Hepe03g1870 346 Pfam Mitochondrial carrier protein 249 335 IPR018108 -
Hepe03g1870 346 Pfam Mitochondrial carrier protein 107 171 IPR018108 -
Hepe03g1870 346 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 2 104 - -
Hepe03g1870 346 SUPERFAMILY Mitochondrial carrier 13 174 IPR023395 -
Hepe03g1870 346 SUPERFAMILY Mitochondrial carrier 205 328 IPR023395 -
Hepe03g1870 346 ProSiteProfiles Solute carrier (Solcar) repeat profile. 244 332 IPR018108 -
Hepe03g1870 346 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 11 172 IPR044712 GO:0006862(InterPro)|GO:0022857(PANTHER)|GO:0035352(PANTHER)|GO:0051724(PANTHER)|GO:0055085(InterPro)|GO:0055085(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g2690 Hepe-Chr2:74687938 Hepe03g1870 Hepe-Chr3:75697492 1.15e-132 dispersed
Hepe03g1870 Hepe-Chr3:75697492 Hepe04g1556 Hepe-Chr4:71094407 3.65e-42 dispersed
Hepe07g2442 Hepe-Chr7:68767739 Hepe03g1870 Hepe-Chr3:75697492 1.23e-06 dispersed
Hepe03g1870 Hepe-Chr3:75697492 Hepe01g2032 Hepe-Chr1:85030691 5.60e-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1870 K15115 - csv:101204681 533.487