Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1874 ATGGCTGCCGGACCCACCACCACCGCCACCACACTATTCTACTCTCTCCTCCTCCTCCTCCTCATCTCCATTATCTCCGCCGCCGCCACCACCGGATCGGTGTGCAGCTCGACCCCAGATCCCTCCTACTGCAAATCGGCCCTCCCGAACCAAACCGGCAATGTGTACTCGTACGGGCGGTCGTCGGTCAGAAAATCCGTGTCGTCGTCGCAGAAATTCCTCCGGTTGGTCCAGAAGCAGCTCCGGTCACGGGCGTCGCTGACGGTACCGGCCGTGAGGGCGCTGGAGGATTGCCAGCTGCTGGCCGAGCTGAACATCGATTACTTGACGACGTCGTTCCGGACGGTGAACACGACGAGTACGACGTTGCCGGAGATGAAGGCGGACGACGTGCAGAGCTTGCTGAGCGCGATACTGACGAATCAACAGACTTGCTTGGATGGGCTGAAGGCGACGGCGGGTTCTTGGTCACTCAAAAATGGACTTTCTCTCCCACTTGCCGCTGACACAAAGCTCTACTCTATGTCCTTGGCCTTATTTAACAAAGGTTGGGTTCCGAAGAAGAAGAAAAGGTCGACATGGAAGGCTGCCGGAAGACACGGCGGATTCAGAAACGGACGAATGTCACTCAAAATGTCGAGCAGAACCAAAGCGATCTATGAGACGGCGACTCGCCGGAATCTGCTGCAGACTGACAACGACGGCGGCGACGACCAGATTTCGGTGAGGGACATCATCGTCGTTAGTCAAGACGGCAGCGGAAATTTTACAACGATTAACGAGGCGATTGCAGCAGCGCCGAACAACTCTGCTCCGACCGACGGTTATTTTTTGATCTTCGTGTCGGCCGGAGTTTATGAAGAATACGTGTCGATCGCGAAGAACAAAAGGTACTTGATGATGATCGGCGATGGCATTAATCAGACCGTTATCACCGGTAATCGAAGCGTCGTTGACGGCTGGACCACTTTCAATTCCGCCACGTTTGCGGTGACCGGACCCGGATTCGTAGCAGTAAACATGACATTCAGAAACACCGCCGGAGCAATAAAGCACCAAGCCGTCGCCGTCCGGAGCGGCGCCGACTTATCCACCTTCTACCTCTGCAGCTTCGAAGCCTACCAAGACACCTTATACACCCACTCCCTCCGCCAATTCTACCGCGAATGCGACATCTACGGCACCGTCGACTTCATCTTCGGCAACGCCGCCGTCGTCTTCCAAAACTGCAACATCTACCCCCGCCTTCCGATGTCCAACCAATTCAACGCCATCACCGCCCAGGGCCGGACCGACCCGAATCAGAACACCGGAACCTCGATCCACAACTGCCGGATCACCGCCGCCGACGACCTGGCCAACAGCAGCGACGCCGGCGTGAAAACGTTCCTGGGGCGGCCGTGGAAGGAGTACTCGAGGACGGTGTATTTGCAGAACTTTATGGATGAACTGATTAATCCGGCGGGGTGGAGGGCTTGGGATGGGGATTTTGCTTTGAACACTTCGTATTATGCGGAATTTGGGAATTTTGGGCCGGGATCTAACACGTCGGAGAGGGTGAATTGGCCGGGATTTCATTTGATTAATGATACTGATGCTGGGAATTTCACGGCGGCGAGTTTTGTTTTGGCGGATGATTGGTTGCCGCAGACCGGCGTTCCGTACACCAGCGGCTTGACAGAGTAG 1686 55.75 MAAGPTTTATTLFYSLLLLLLISIISAAATTGSVCSSTPDPSYCKSALPNQTGNVYSYGRSSVRKSVSSSQKFLRLVQKQLRSRASLTVPAVRALEDCQLLAELNIDYLTTSFRTVNTTSTTLPEMKADDVQSLLSAILTNQQTCLDGLKATAGSWSLKNGLSLPLAADTKLYSMSLALFNKGWVPKKKKRSTWKAAGRHGGFRNGRMSLKMSSRTKAIYETATRRNLLQTDNDGGDDQISVRDIIVVSQDGSGNFTTINEAIAAAPNNSAPTDGYFLIFVSAGVYEEYVSIAKNKRYLMMIGDGINQTVITGNRSVVDGWTTFNSATFAVTGPGFVAVNMTFRNTAGAIKHQAVAVRSGADLSTFYLCSFEAYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNIYPRLPMSNQFNAITAQGRTDPNQNTGTSIHNCRITAADDLANSSDAGVKTFLGRPWKEYSRTVYLQNFMDELINPAGWRAWDGDFALNTSYYAEFGNFGPGSNTSERVNWPGFHLINDTDAGNFTAASFVLADDWLPQTGVPYTSGLTE 561
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 75735245 75739251 - Hsped.03g18740.1 Hepe03g1874 566872
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1874 561 ProSitePatterns Pectinesterase signature 2. 392 401 IPR033131 -
Hepe03g1874 561 FunFam Pectinesterase 32 182 - -
Hepe03g1874 561 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 33 182 IPR035513 -
Hepe03g1874 561 CDD PMEI-like_3 33 184 - -
Hepe03g1874 561 FunFam Pectinesterase 239 559 - -
Hepe03g1874 561 Pfam Pectinesterase 246 543 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe03g1874 561 Gene3D Invertase/pectin methylesterase inhibitor family protein 30 182 IPR035513 -
Hepe03g1874 561 Gene3D - 240 559 IPR012334 -
Hepe03g1874 561 Pfam Plant invertase/pectin methylesterase inhibitor 33 179 IPR006501 GO:0004857(InterPro)
Hepe03g1874 561 SUPERFAMILY Pectin lyase-like 244 558 IPR011050 -
Hepe03g1874 561 SMART PMEI_2 26 179 IPR006501 GO:0004857(InterPro)
Hepe03g1874 561 PANTHER PECTINESTERASE 12 550 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1123 Hepe-Chr1:76124735 Hepe03g1874 Hepe-Chr3:75735245 6.36e-172 dispersed
Hepe03g1874 Hepe-Chr3:75735245 Hepe10g0809 Hepe-Chr10:16410601 4.93e-192 dispersed
Hepe03g1874 Hepe-Chr3:75735245 Hepe03g1875 Hepe-Chr3:75777093 5.78e-131 tandem
Hepe01g2164 Hepe-Chr1:86291753 Hepe03g1874 Hepe-Chr3:75735245 2.90e-227 transposed
Hepe03g0083 Hepe-Chr3:987414 Hepe03g1874 Hepe-Chr3:75735245 2.26e-106 wgd
Hepe03g1874 Hepe-Chr3:75735245 Hepe05g1418 Hepe-Chr5:63126448 6.72e-103 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1874 K01051 - csv:101205321 980.319