Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1875 CCGGGATATGGGGCGGTGAAGGGTGGGTTTCCGATTTGGGTTTCGGTTAAGGATCGGAGACTGTTGCAGGCGGCGGTGAATGAGACGAAGTTTAATTTGGTGGTGGCGAAGGACGGCTCCGGGAATTTCACCACCGTTGGGGAGGCCGTCGCCGCCGCTCCAAATTCGAGCGCCACCAGGTTTGTGATATACATAAAAGCAGGAGCATATTTTGAGAACGTGGAAATAGAAAGGAAAAAGACGAATTTGATGTTCGTCGGCGACGGGACCGGAAAAACACTGATAAAAGCCGACCGGAACGTGGTGGACGGCTGGACTACTTTCCGATCAGCCACCGTCGCGGTGGTGGGCAACGGATTCATAGCAAAAGGCATAACATTTGAAAACTTTGCTGGTCCAAGTAAGCACCAAGCCGTAGCCTTACGGAGCAACTCTGACTTCTCTGCATTTTATCAATGCAACTTCATCGGCTATCAAGACACTCTCTACGTCCATTCCCTTCGCCAATTCTACCGTGACTGTGATATCTACGGCACCATCGACTTCATCTTCGGCAACGCTGCCGTTGTCTTCCAAAACTGCAATCTCTACGCCCGAAAACCTAACTCGAACCAAAGTAACATATTCACTGCTCAGGGTCGTGAGGATCCAAACCAAAACACTGGAATCTCAATCTTGAATTGCAAGGTTGAAGCTGCCTCTGATTTGATCCCAGTTCTTTCGACGTTTAAGACTTACTTGGGTCGTCCCTGGAAGTTGTATTCGAGAACAGTTTTTCTCCGATCATTTATTGGGCAATTGGTCGACCCGGTCGGGTGGCTTGAGTGGAACGGAACGTTTGCATTGGATACTTTGTATTATGGGGAGTATTTAAATCGAGGACCCGGTTCGAATACAACCAGACGGGTTACTTGGCCGGGTTATCGTGTGATTACTAACTCGACAGAGGCGAGTCAGTTTACAGTAGATGCATTTATACTGGGTAGTTCGTGGCTGAATTCGACCGGGATTCCTTTCTTCTCCGGTCTGGCTTGA 1035 49.08 PGYGAVKGGFPIWVSVKDRRLLQAAVNETKFNLVVAKDGSGNFTTVGEAVAAAPNSSATRFVIYIKAGAYFENVEIERKKTNLMFVGDGTGKTLIKADRNVVDGWTTFRSATVAVVGNGFIAKGITFENFAGPSKHQAVALRSNSDFSAFYQCNFIGYQDTLYVHSLRQFYRDCDIYGTIDFIFGNAAVVFQNCNLYARKPNSNQSNIFTAQGREDPNQNTGISILNCKVEAASDLIPVLSTFKTYLGRPWKLYSRTVFLRSFIGQLVDPVGWLEWNGTFALDTLYYGEYLNRGPGSNTTRRVTWPGYRVITNSTEASQFTVDAFILGSSWLNSTGIPFFSGLA 344
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 75777093 75781885 + Hsped.03g18750.1 Hepe03g1875 566873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1875 344 ProSitePatterns Pectinesterase signature 2. 176 185 IPR033131 -
Hepe03g1875 344 Gene3D - 26 343 IPR012334 -
Hepe03g1875 344 FunFam Pectinesterase 26 343 - -
Hepe03g1875 344 Pfam Pectinesterase 32 328 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Hepe03g1875 344 PANTHER PECTINESTERASE 10 334 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Hepe03g1875 344 SUPERFAMILY Pectin lyase-like 30 342 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1875 Hepe-Chr3:75777093 Hepe06g0790 Hepe-Chr6:54636648 5.88e-148 dispersed
Hepe03g1874 Hepe-Chr3:75735245 Hepe03g1875 Hepe-Chr3:75777093 5.78e-131 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1875 K01051 - csv:101205557 656.366