Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe03g1918 | ATGGATGGTAGCAAAGGCAAGGTAGAGAGAGTTGTAGAATTTAAGTACGATTTCACCACCGGCGGAGGCGGAGGCGGTGGAGGAGTTGGTGGCAGCACCGGTGGGTCGAGCGAGGAAGCCGGTAGCGGCATCGGCGGGGTTGTAAAAGAGCAAGATCGGCTACTTCCAATAGCAAACGTTGGGAGGATCATGAAGCAAATTCTGCCTCCAAACGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGTTTCGTCACCGGCGAGGCGTCGGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCCTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGAAATGGAAGGGGAGAGAGCTCAACAAAATAAGGGCTGTTGCTATAATAATCATAATAATCATGATGCATCAGAGACATAA | 495 | 47.07 | MDGSKGKVERVVEFKYDFTTGGGGGGGGVGGSTGGSSEEAGSGIGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCYNNHNNHDASET | 164 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 76251358 | 76251852 | - | Hsped.03g19180.1 | Hepe03g1918 | 566916 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe03g1918 | 164 | SUPERFAMILY | Histone-fold | 51 | 151 | IPR009072 | GO:0046982(InterPro) | |
Hepe03g1918 | 164 | FunFam | Nuclear transcription factor Y subunit B-3 | 45 | 164 | - | - | |
Hepe03g1918 | 164 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 54 | 118 | IPR003958 | - | |
Hepe03g1918 | 164 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 85 | 101 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Hepe03g1918 | 164 | Gene3D | Histone, subunit A | 46 | 164 | IPR009072 | GO:0046982(InterPro) | |
Hepe03g1918 | 164 | MobiDBLite | consensus disorder prediction | 25 | 45 | - | - | |
Hepe03g1918 | 164 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 45 | 151 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
Hepe03g1918 | 164 | PRINTS | CCAAT-binding transcription factor subunit A signature | 120 | 138 | - | - | |
Hepe03g1918 | 164 | PRINTS | CCAAT-binding transcription factor subunit A signature | 82 | 100 | - | - | |
Hepe03g1918 | 164 | PRINTS | CCAAT-binding transcription factor subunit A signature | 101 | 119 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe03g1918 | Hepe-Chr3:76251358 | Hepe06g0617 | Hepe-Chr6:45893488 | 3.01e-50 | dispersed | |
Hepe03g1918 | Hepe-Chr3:76251358 | Hepe01g0881 | Hepe-Chr1:72932981 | 3.35e-44 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
55325 | PF00808 | CBFD_NFYB_HMF | 7.30E-27 | CL0012 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe03g1918 | K08065 | - | csv:101204763 | 255.758 |