Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe03g1918 ATGGATGGTAGCAAAGGCAAGGTAGAGAGAGTTGTAGAATTTAAGTACGATTTCACCACCGGCGGAGGCGGAGGCGGTGGAGGAGTTGGTGGCAGCACCGGTGGGTCGAGCGAGGAAGCCGGTAGCGGCATCGGCGGGGTTGTAAAAGAGCAAGATCGGCTACTTCCAATAGCAAACGTTGGGAGGATCATGAAGCAAATTCTGCCTCCAAACGCCAAAATCTCCAAAGAAGCCAAAGAAACTATGCAAGAATGTGTGTCGGAGTTCATCAGTTTCGTCACCGGCGAGGCGTCGGATAAGTGCCATAAGGAGAAGAGGAAGACTGTTAATGGTGATGATATTTGCTGTGCCTTGGCTACACTTGGATTTGATGATTATGCTGAGCCTTTGAGAAGGTATTTGGTTAGGTATAGAGAAATGGAAGGGGAGAGAGCTCAACAAAATAAGGGCTGTTGCTATAATAATCATAATAATCATGATGCATCAGAGACATAA 495 47.07 MDGSKGKVERVVEFKYDFTTGGGGGGGGVGGSTGGSSEEAGSGIGGVVKEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDICCALATLGFDDYAEPLRRYLVRYREMEGERAQQNKGCCYNNHNNHDASET 164
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 76251358 76251852 - Hsped.03g19180.1 Hepe03g1918 566916
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe03g1918 164 SUPERFAMILY Histone-fold 51 151 IPR009072 GO:0046982(InterPro)
Hepe03g1918 164 FunFam Nuclear transcription factor Y subunit B-3 45 164 - -
Hepe03g1918 164 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 54 118 IPR003958 -
Hepe03g1918 164 ProSitePatterns NF-YB/HAP3 subunit signature. 85 101 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe03g1918 164 Gene3D Histone, subunit A 46 164 IPR009072 GO:0046982(InterPro)
Hepe03g1918 164 MobiDBLite consensus disorder prediction 25 45 - -
Hepe03g1918 164 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 45 151 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Hepe03g1918 164 PRINTS CCAAT-binding transcription factor subunit A signature 120 138 - -
Hepe03g1918 164 PRINTS CCAAT-binding transcription factor subunit A signature 82 100 - -
Hepe03g1918 164 PRINTS CCAAT-binding transcription factor subunit A signature 101 119 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe03g1918 Hepe-Chr3:76251358 Hepe06g0617 Hepe-Chr6:45893488 3.01e-50 dispersed
Hepe03g1918 Hepe-Chr3:76251358 Hepe01g0881 Hepe-Chr1:72932981 3.35e-44 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
55325 PF00808 CBFD_NFYB_HMF 7.30E-27 CL0012 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe03g1918 K08065 - csv:101204763 255.758